Hb_000096_090

Information

Type -
Description -
Location Contig96: 73408-78544
Sequence    

Annotation

kegg
ID rcu:RCOM_0581170
description hypothetical protein
nr
ID KDP32090.1
description hypothetical protein JCGZ_12551 [Jatropha curcas]
swissprot
ID Q9SZG0
description Heptahelical transmembrane protein 4 OS=Arabidopsis thaliana GN=HHP4 PE=2 SV=1
trembl
ID A0A067KIJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12551 PE=4 SV=1
Gene Ontology
ID GO:0016021
description heptahelical transmembrane protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63689: 73427-78493
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000096_090 0.0 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
2 Hb_003376_040 0.0847972801 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
3 Hb_001396_180 0.0931790741 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
4 Hb_000648_110 0.0969432776 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
5 Hb_001053_180 0.097494583 - - protein binding protein, putative [Ricinus communis]
6 Hb_000316_050 0.0975587144 - - enoyl-ACP reductase [Vernicia fordii]
7 Hb_003732_020 0.1011511609 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
8 Hb_001360_040 0.1060411876 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
9 Hb_000505_010 0.1071473827 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
10 Hb_000264_240 0.1111135266 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002368_050 0.1145487251 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000630_070 0.1149960036 - - PREDICTED: cell division protein FtsZ homolog 2-1, chloroplastic [Jatropha curcas]
13 Hb_002681_020 0.1154640852 - - aldose 1-epimerase, putative [Ricinus communis]
14 Hb_011316_040 0.1166324764 - - peptidase, putative [Ricinus communis]
15 Hb_116349_100 0.1185684233 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
16 Hb_035273_030 0.1186506219 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
17 Hb_002681_110 0.1196321099 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
18 Hb_000041_080 0.1196874275 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
19 Hb_001776_110 0.1200122641 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
20 Hb_005433_040 0.1220302644 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_000096_090 Hb_000096_090 Hb_003376_040 Hb_003376_040 Hb_000096_090--Hb_003376_040 Hb_001396_180 Hb_001396_180 Hb_000096_090--Hb_001396_180 Hb_000648_110 Hb_000648_110 Hb_000096_090--Hb_000648_110 Hb_001053_180 Hb_001053_180 Hb_000096_090--Hb_001053_180 Hb_000316_050 Hb_000316_050 Hb_000096_090--Hb_000316_050 Hb_003732_020 Hb_003732_020 Hb_000096_090--Hb_003732_020 Hb_003929_160 Hb_003929_160 Hb_003376_040--Hb_003929_160 Hb_007380_070 Hb_007380_070 Hb_003376_040--Hb_007380_070 Hb_007908_020 Hb_007908_020 Hb_003376_040--Hb_007908_020 Hb_001862_190 Hb_001862_190 Hb_003376_040--Hb_001862_190 Hb_003376_040--Hb_001396_180 Hb_001360_040 Hb_001360_040 Hb_001396_180--Hb_001360_040 Hb_005539_350 Hb_005539_350 Hb_001396_180--Hb_005539_350 Hb_001269_680 Hb_001269_680 Hb_001396_180--Hb_001269_680 Hb_153112_020 Hb_153112_020 Hb_001396_180--Hb_153112_020 Hb_011316_040 Hb_011316_040 Hb_000648_110--Hb_011316_040 Hb_024185_020 Hb_024185_020 Hb_000648_110--Hb_024185_020 Hb_001277_330 Hb_001277_330 Hb_000648_110--Hb_001277_330 Hb_002687_110 Hb_002687_110 Hb_000648_110--Hb_002687_110 Hb_000236_070 Hb_000236_070 Hb_000648_110--Hb_000236_070 Hb_000409_020 Hb_000409_020 Hb_000648_110--Hb_000409_020 Hb_024682_010 Hb_024682_010 Hb_001053_180--Hb_024682_010 Hb_000127_010 Hb_000127_010 Hb_001053_180--Hb_000127_010 Hb_001031_080 Hb_001031_080 Hb_001053_180--Hb_001031_080 Hb_000345_390 Hb_000345_390 Hb_001053_180--Hb_000345_390 Hb_116349_100 Hb_116349_100 Hb_001053_180--Hb_116349_100 Hb_000316_050--Hb_000236_070 Hb_001959_070 Hb_001959_070 Hb_000316_050--Hb_001959_070 Hb_000316_050--Hb_000648_110 Hb_000505_010 Hb_000505_010 Hb_000316_050--Hb_000505_010 Hb_000023_140 Hb_000023_140 Hb_000316_050--Hb_000023_140 Hb_000264_240 Hb_000264_240 Hb_003732_020--Hb_000264_240 Hb_000175_440 Hb_000175_440 Hb_003732_020--Hb_000175_440 Hb_003732_020--Hb_001360_040 Hb_002685_140 Hb_002685_140 Hb_003732_020--Hb_002685_140 Hb_000787_050 Hb_000787_050 Hb_003732_020--Hb_000787_050 Hb_001135_050 Hb_001135_050 Hb_003732_020--Hb_001135_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.793 5.18053 14.5466 17.1481 29.5804 32.0665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.4623 26.8578 41.6541 6.93296 15.2492

CAGE analysis