Hb_000096_150

Information

Type -
Description -
Location Contig96: 147564-151086
Sequence    

Annotation

kegg
ID rcu:RCOM_0580980
description NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative (EC:1.6.99.3)
nr
ID XP_002525280.1
description NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
swissprot
ID Q9FJW4
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1
trembl
ID B9SH11
description NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial, putative OS=Ricinus communis GN=RCOM_0580980 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63696: 147406-147586 , PASA_asmbl_63697: 147720-151028
cDNA
(Sanger)
(ID:Location)		 011_F06.ab1: 147778-150994

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000096_150 0.0 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
2 Hb_000056_250 0.0739935779 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
3 Hb_000125_210 0.078071398 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
4 Hb_000928_130 0.0784777681 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_000318_160 0.0887336159 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
6 Hb_000673_020 0.0889397004 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
7 Hb_002026_120 0.0949064154 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
8 Hb_068056_030 0.0950237311 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
9 Hb_000224_140 0.0962992132 - - ribonuclease z, chloroplast, putative [Ricinus communis]
10 Hb_003880_030 0.099148314 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
11 Hb_000436_030 0.1005384922 - - conserved hypothetical protein [Ricinus communis]
12 Hb_019113_020 0.101106768 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
13 Hb_000417_260 0.1022645523 - - protein with unknown function [Ricinus communis]
14 Hb_161175_010 0.1026710947 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
15 Hb_000056_070 0.1037448745 - - -
16 Hb_005278_040 0.1068124597 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
17 Hb_000445_490 0.1072671994 - - -
18 Hb_000175_030 0.1073947485 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
19 Hb_013405_140 0.1096203211 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
20 Hb_011671_460 0.1109186583 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]

Gene co-expression network

sample Hb_000096_150 Hb_000096_150 Hb_000056_250 Hb_000056_250 Hb_000096_150--Hb_000056_250 Hb_000125_210 Hb_000125_210 Hb_000096_150--Hb_000125_210 Hb_000928_130 Hb_000928_130 Hb_000096_150--Hb_000928_130 Hb_000318_160 Hb_000318_160 Hb_000096_150--Hb_000318_160 Hb_000673_020 Hb_000673_020 Hb_000096_150--Hb_000673_020 Hb_002026_120 Hb_002026_120 Hb_000096_150--Hb_002026_120 Hb_003291_020 Hb_003291_020 Hb_000056_250--Hb_003291_020 Hb_005278_040 Hb_005278_040 Hb_000056_250--Hb_005278_040 Hb_027751_060 Hb_027751_060 Hb_000056_250--Hb_027751_060 Hb_000417_260 Hb_000417_260 Hb_000056_250--Hb_000417_260 Hb_130719_010 Hb_130719_010 Hb_000056_250--Hb_130719_010 Hb_000125_210--Hb_000673_020 Hb_161175_010 Hb_161175_010 Hb_000125_210--Hb_161175_010 Hb_000125_210--Hb_000318_160 Hb_003349_080 Hb_003349_080 Hb_000125_210--Hb_003349_080 Hb_000175_030 Hb_000175_030 Hb_000125_210--Hb_000175_030 Hb_000928_130--Hb_002026_120 Hb_000928_130--Hb_000318_160 Hb_000445_490 Hb_000445_490 Hb_000928_130--Hb_000445_490 Hb_023344_050 Hb_023344_050 Hb_000928_130--Hb_023344_050 Hb_001240_020 Hb_001240_020 Hb_000928_130--Hb_001240_020 Hb_000318_160--Hb_003349_080 Hb_003050_280 Hb_003050_280 Hb_000318_160--Hb_003050_280 Hb_000224_140 Hb_000224_140 Hb_000318_160--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_000318_160--Hb_068056_030 Hb_000318_160--Hb_000445_490 Hb_013405_140 Hb_013405_140 Hb_000673_020--Hb_013405_140 Hb_003880_030 Hb_003880_030 Hb_000673_020--Hb_003880_030 Hb_000673_020--Hb_000175_030 Hb_027654_050 Hb_027654_050 Hb_000673_020--Hb_027654_050 Hb_000934_190 Hb_000934_190 Hb_000673_020--Hb_000934_190 Hb_002016_080 Hb_002016_080 Hb_000673_020--Hb_002016_080 Hb_002026_120--Hb_023344_050 Hb_000530_070 Hb_000530_070 Hb_002026_120--Hb_000530_070 Hb_002026_120--Hb_000318_160 Hb_001314_040 Hb_001314_040 Hb_002026_120--Hb_001314_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.69 5.1488 21.9393 29.8556 9.71043 12.1508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.5795 73.4497 65.8633 26.8968 36.2191

CAGE analysis