Hb_000096_160

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig96: 153477-158253
Sequence    

Annotation

kegg
ID rcu:RCOM_0580970
description Histone H1.1, putative
nr
ID XP_012079422.1
description PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
swissprot
ID Q9FJW5
description Telomere repeat-binding factor 2 OS=Arabidopsis thaliana GN=TRB2 PE=1 SV=1
trembl
ID A0A067KJS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12545 PE=4 SV=1
Gene Ontology
ID GO:0000786
description homeodomain-like winged-helix dna-binding family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000096_160 0.0 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
2 Hb_003633_050 0.046225481 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
3 Hb_001085_240 0.0605451192 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
4 Hb_005914_170 0.0743004859 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
5 Hb_000228_110 0.0761773584 - - unnamed protein product [Vitis vinifera]
6 Hb_001157_110 0.0857167288 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
7 Hb_000103_270 0.086243927 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
8 Hb_019654_030 0.0884179586 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
9 Hb_003376_250 0.0937270353 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
10 Hb_000210_120 0.0981317072 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
11 Hb_000095_080 0.0983216661 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
12 Hb_001314_050 0.0985856675 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
13 Hb_031862_100 0.098727627 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_011344_190 0.1001198 - - PREDICTED: maspardin [Jatropha curcas]
15 Hb_000181_050 0.1005628589 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
16 Hb_000227_070 0.1020580061 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
17 Hb_001348_020 0.1025107268 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
18 Hb_002481_080 0.1032837705 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
19 Hb_016522_010 0.1044540843 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
20 Hb_019053_030 0.1051511394 - - PREDICTED: sulfite oxidase [Jatropha curcas]

Gene co-expression network

sample Hb_000096_160 Hb_000096_160 Hb_003633_050 Hb_003633_050 Hb_000096_160--Hb_003633_050 Hb_001085_240 Hb_001085_240 Hb_000096_160--Hb_001085_240 Hb_005914_170 Hb_005914_170 Hb_000096_160--Hb_005914_170 Hb_000228_110 Hb_000228_110 Hb_000096_160--Hb_000228_110 Hb_001157_110 Hb_001157_110 Hb_000096_160--Hb_001157_110 Hb_000103_270 Hb_000103_270 Hb_000096_160--Hb_000103_270 Hb_003633_050--Hb_001085_240 Hb_003633_050--Hb_005914_170 Hb_011344_190 Hb_011344_190 Hb_003633_050--Hb_011344_190 Hb_003376_250 Hb_003376_250 Hb_003633_050--Hb_003376_250 Hb_019654_030 Hb_019654_030 Hb_003633_050--Hb_019654_030 Hb_000094_210 Hb_000094_210 Hb_001085_240--Hb_000094_210 Hb_001085_240--Hb_000228_110 Hb_002675_140 Hb_002675_140 Hb_001085_240--Hb_002675_140 Hb_001085_240--Hb_005914_170 Hb_000210_120 Hb_000210_120 Hb_005914_170--Hb_000210_120 Hb_011344_120 Hb_011344_120 Hb_005914_170--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_005914_170--Hb_001314_050 Hb_031862_100 Hb_031862_100 Hb_005914_170--Hb_031862_100 Hb_023001_040 Hb_023001_040 Hb_005914_170--Hb_023001_040 Hb_001348_020 Hb_001348_020 Hb_000228_110--Hb_001348_020 Hb_019053_030 Hb_019053_030 Hb_000228_110--Hb_019053_030 Hb_002889_030 Hb_002889_030 Hb_000228_110--Hb_002889_030 Hb_000228_110--Hb_003633_050 Hb_000497_110 Hb_000497_110 Hb_001157_110--Hb_000497_110 Hb_001157_110--Hb_019654_030 Hb_002631_080 Hb_002631_080 Hb_001157_110--Hb_002631_080 Hb_001157_110--Hb_000228_110 Hb_001157_110--Hb_001085_240 Hb_000103_270--Hb_000210_120 Hb_009687_010 Hb_009687_010 Hb_000103_270--Hb_009687_010 Hb_000103_270--Hb_005914_170 Hb_006698_030 Hb_006698_030 Hb_000103_270--Hb_006698_030 Hb_003098_020 Hb_003098_020 Hb_000103_270--Hb_003098_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.53744 3.3458 3.30165 9.62184 5.02647 5.98249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.0592 10.1208 8.8634 14.6362 6.61356

CAGE analysis