Hb_000098_020

Information

Type transcription factor
Description TF Family: GRAS
Location Contig98: 2583-3905
Sequence    

Annotation

kegg
ID tcc:TCM_010965
description GRAS family transcription factor family protein
nr
ID XP_007045197.1
description GRAS family transcription factor family protein [Theobroma cacao]
swissprot
ID Q8S4W7
description DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1
trembl
ID A0A061EFF9
description GRAS family transcription factor family protein OS=Theobroma cacao GN=TCM_010965 PE=4 SV=1
Gene Ontology
ID GO:0005634
description della protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64330: 2711-2810 , PASA_asmbl_64331: 2819-3640
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_020 0.0 transcription factor TF Family: GRAS GRAS family transcription factor family protein [Theobroma cacao]
2 Hb_010560_060 0.1284216646 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
3 Hb_002111_060 0.1795043854 - - PREDICTED: toll-like receptor 13 [Jatropha curcas]
4 Hb_000157_200 0.1895014418 - - PREDICTED: putative disease resistance protein RGA4 isoform X3 [Eucalyptus grandis]
5 Hb_000516_040 0.1895338138 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
6 Hb_078477_050 0.1966989107 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
7 Hb_000258_150 0.1978833766 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
8 Hb_148121_080 0.2037178924 transcription factor TF Family: C2H2 PREDICTED: protein SHOOT GRAVITROPISM 5 [Populus euphratica]
9 Hb_003203_020 0.2039910296 - - unknown [Lotus japonicus]
10 Hb_135611_010 0.2072685422 - - PREDICTED: uncharacterized protein LOC105142085 [Populus euphratica]
11 Hb_003858_040 0.2113001399 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
12 Hb_000453_100 0.212033795 - - PREDICTED: metallothionein-like protein 1 [Sesamum indicum]
13 Hb_000317_330 0.2125125921 - - PREDICTED: RNA-binding protein 38-like [Jatropha curcas]
14 Hb_005288_200 0.2129119219 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_001252_180 0.2142685336 desease resistance Gene Name: DUF3542 conserved hypothetical protein [Ricinus communis]
16 Hb_002000_060 0.2157801542 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
17 Hb_005730_130 0.2185879025 - - PRA1 family protein [Theobroma cacao]
18 Hb_011519_030 0.2189643307 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
19 Hb_010531_050 0.2193508043 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
20 Hb_000365_260 0.2205498273 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000098_020 Hb_000098_020 Hb_010560_060 Hb_010560_060 Hb_000098_020--Hb_010560_060 Hb_002111_060 Hb_002111_060 Hb_000098_020--Hb_002111_060 Hb_000157_200 Hb_000157_200 Hb_000098_020--Hb_000157_200 Hb_000516_040 Hb_000516_040 Hb_000098_020--Hb_000516_040 Hb_078477_050 Hb_078477_050 Hb_000098_020--Hb_078477_050 Hb_000258_150 Hb_000258_150 Hb_000098_020--Hb_000258_150 Hb_116349_160 Hb_116349_160 Hb_010560_060--Hb_116349_160 Hb_028358_010 Hb_028358_010 Hb_010560_060--Hb_028358_010 Hb_007803_060 Hb_007803_060 Hb_010560_060--Hb_007803_060 Hb_010560_060--Hb_002111_060 Hb_000563_600 Hb_000563_600 Hb_010560_060--Hb_000563_600 Hb_000645_120 Hb_000645_120 Hb_002111_060--Hb_000645_120 Hb_009620_050 Hb_009620_050 Hb_002111_060--Hb_009620_050 Hb_003430_060 Hb_003430_060 Hb_002111_060--Hb_003430_060 Hb_000086_200 Hb_000086_200 Hb_002111_060--Hb_000086_200 Hb_002111_060--Hb_078477_050 Hb_000836_270 Hb_000836_270 Hb_002111_060--Hb_000836_270 Hb_003203_020 Hb_003203_020 Hb_000157_200--Hb_003203_020 Hb_000157_200--Hb_003430_060 Hb_000336_270 Hb_000336_270 Hb_000157_200--Hb_000336_270 Hb_010697_040 Hb_010697_040 Hb_000157_200--Hb_010697_040 Hb_002081_120 Hb_002081_120 Hb_000157_200--Hb_002081_120 Hb_000046_070 Hb_000046_070 Hb_000157_200--Hb_000046_070 Hb_135611_010 Hb_135611_010 Hb_000516_040--Hb_135611_010 Hb_000983_160 Hb_000983_160 Hb_000516_040--Hb_000983_160 Hb_000516_040--Hb_000563_600 Hb_000172_540 Hb_000172_540 Hb_000516_040--Hb_000172_540 Hb_002478_030 Hb_002478_030 Hb_000516_040--Hb_002478_030 Hb_029866_100 Hb_029866_100 Hb_000516_040--Hb_029866_100 Hb_008177_030 Hb_008177_030 Hb_078477_050--Hb_008177_030 Hb_001486_070 Hb_001486_070 Hb_078477_050--Hb_001486_070 Hb_001140_350 Hb_001140_350 Hb_078477_050--Hb_001140_350 Hb_001366_210 Hb_001366_210 Hb_078477_050--Hb_001366_210 Hb_080313_010 Hb_080313_010 Hb_078477_050--Hb_080313_010 Hb_000258_150--Hb_010560_060 Hb_022174_010 Hb_022174_010 Hb_000258_150--Hb_022174_010 Hb_003654_010 Hb_003654_010 Hb_000258_150--Hb_003654_010 Hb_000365_260 Hb_000365_260 Hb_000258_150--Hb_000365_260 Hb_004007_160 Hb_004007_160 Hb_000258_150--Hb_004007_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.305 7.77651 3.11085 13.5527 8.55346 6.81474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25245 1.81945 6.11042 5.74135 2.30634

CAGE analysis