Hb_000098_040

Information

Type -
Description -
Location Contig98: 17863-18303
Sequence    

Annotation

kegg
ID rcu:RCOM_0321060
description Ferredoxin-2, chloroplast precursor, putative
nr
ID XP_002530673.1
description Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9ZTS2
description Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1
trembl
ID B9SXF4
description Ferredoxin-2, chloroplast, putative OS=Ricinus communis GN=RCOM_0321060 PE=4 SV=1
Gene Ontology
ID GO:0009055
description ferredoxin- chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64334: 17574-18355 , PASA_asmbl_64337: 18868-26896
cDNA
(Sanger)
(ID:Location)		 004_G07.ab1: 17711-18353 , 046_K09.ab1: 17711-18346

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_040 0.0 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
2 Hb_000352_230 0.0381398662 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_000307_100 0.0388418614 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
4 Hb_001564_120 0.0460402673 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
5 Hb_000329_430 0.0496431086 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE10 [Jatropha curcas]
6 Hb_009771_090 0.0500340647 - - -
7 Hb_002809_030 0.0502527797 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000545_180 0.0583686049 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
9 Hb_000826_010 0.0687069661 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005063_030 0.0715718839 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_005054_120 0.0725371866 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
12 Hb_014361_120 0.0730048821 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
13 Hb_000320_370 0.0743616003 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
14 Hb_001007_070 0.0760139668 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
15 Hb_000099_120 0.0763706003 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
16 Hb_002701_250 0.0774200064 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
17 Hb_009193_070 0.0788065762 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
18 Hb_001999_230 0.0791826122 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
19 Hb_000392_470 0.0792350183 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000906_080 0.0807528727 - - short chain alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000098_040 Hb_000098_040 Hb_000352_230 Hb_000352_230 Hb_000098_040--Hb_000352_230 Hb_000307_100 Hb_000307_100 Hb_000098_040--Hb_000307_100 Hb_001564_120 Hb_001564_120 Hb_000098_040--Hb_001564_120 Hb_000329_430 Hb_000329_430 Hb_000098_040--Hb_000329_430 Hb_009771_090 Hb_009771_090 Hb_000098_040--Hb_009771_090 Hb_002809_030 Hb_002809_030 Hb_000098_040--Hb_002809_030 Hb_000352_230--Hb_009771_090 Hb_000545_180 Hb_000545_180 Hb_000352_230--Hb_000545_180 Hb_000352_230--Hb_002809_030 Hb_000352_230--Hb_000307_100 Hb_014361_120 Hb_014361_120 Hb_000352_230--Hb_014361_120 Hb_000307_100--Hb_000329_430 Hb_000307_100--Hb_002809_030 Hb_000307_100--Hb_009771_090 Hb_010697_020 Hb_010697_020 Hb_000307_100--Hb_010697_020 Hb_005063_030 Hb_005063_030 Hb_001564_120--Hb_005063_030 Hb_001999_230 Hb_001999_230 Hb_001564_120--Hb_001999_230 Hb_001975_100 Hb_001975_100 Hb_001564_120--Hb_001975_100 Hb_000099_120 Hb_000099_120 Hb_001564_120--Hb_000099_120 Hb_001007_070 Hb_001007_070 Hb_001564_120--Hb_001007_070 Hb_000329_430--Hb_009771_090 Hb_003925_120 Hb_003925_120 Hb_000329_430--Hb_003925_120 Hb_000826_010 Hb_000826_010 Hb_000329_430--Hb_000826_010 Hb_000329_430--Hb_000352_230 Hb_009771_090--Hb_000545_180 Hb_009771_090--Hb_014361_120 Hb_000320_370 Hb_000320_370 Hb_002809_030--Hb_000320_370 Hb_001348_160 Hb_001348_160 Hb_002809_030--Hb_001348_160 Hb_001191_060 Hb_001191_060 Hb_002809_030--Hb_001191_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 54.9752 397.581 265.608 0 0.328557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49728 0.130673 0 4.18779 1078.68

CAGE analysis