Hb_000098_050

Information

Type -
Description -
Location Contig98: 18809-27032
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22800g
description endomembrane protein 70
nr
ID CDY44834.1
description BnaCnng11900D [Brassica napus]
swissprot
ID Q940G0
description Transmembrane 9 superfamily member 1 OS=Arabidopsis thaliana GN=TMN1 PE=1 SV=1
trembl
ID M4ESG0
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra031739 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane 9 superfamily member 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64335: 24179-24364 , PASA_asmbl_64337: 18868-26896 , PASA_asmbl_64338: 23578-24070
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_050 0.0 - - BnaCnng11900D [Brassica napus]
2 Hb_009247_010 0.0736781982 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
3 Hb_000320_290 0.0737541158 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
4 Hb_005062_110 0.0752118834 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
5 Hb_000085_260 0.0760570163 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
6 Hb_000890_030 0.0761827594 - - plastid CUL1 [Hevea brasiliensis]
7 Hb_044486_020 0.0833297231 - - CASTOR protein [Glycine max]
8 Hb_001159_030 0.0837435716 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
9 Hb_010042_030 0.0851314126 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
10 Hb_000580_030 0.0863360326 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
11 Hb_000205_280 0.0939440396 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
12 Hb_012180_010 0.0942076816 - - PREDICTED: (S)-ureidoglycine aminohydrolase [Jatropha curcas]
13 Hb_001103_090 0.0942733327 - - PREDICTED: patellin-3 [Populus euphratica]
14 Hb_000054_040 0.0967891267 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
15 Hb_000503_020 0.0967990484 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
16 Hb_012760_030 0.099369836 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
17 Hb_001623_110 0.0994858856 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
18 Hb_015026_100 0.1001379724 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
19 Hb_000630_030 0.1019158208 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
20 Hb_000622_340 0.1022362484 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]

Gene co-expression network

sample Hb_000098_050 Hb_000098_050 Hb_009247_010 Hb_009247_010 Hb_000098_050--Hb_009247_010 Hb_000320_290 Hb_000320_290 Hb_000098_050--Hb_000320_290 Hb_005062_110 Hb_005062_110 Hb_000098_050--Hb_005062_110 Hb_000085_260 Hb_000085_260 Hb_000098_050--Hb_000085_260 Hb_000890_030 Hb_000890_030 Hb_000098_050--Hb_000890_030 Hb_044486_020 Hb_044486_020 Hb_000098_050--Hb_044486_020 Hb_000116_150 Hb_000116_150 Hb_009247_010--Hb_000116_150 Hb_009247_010--Hb_005062_110 Hb_009247_010--Hb_000890_030 Hb_000818_100 Hb_000818_100 Hb_009247_010--Hb_000818_100 Hb_009222_070 Hb_009222_070 Hb_009247_010--Hb_009222_070 Hb_000054_040 Hb_000054_040 Hb_000320_290--Hb_000054_040 Hb_121089_030 Hb_121089_030 Hb_000320_290--Hb_121089_030 Hb_010042_030 Hb_010042_030 Hb_000320_290--Hb_010042_030 Hb_188063_050 Hb_188063_050 Hb_000320_290--Hb_188063_050 Hb_030982_010 Hb_030982_010 Hb_000320_290--Hb_030982_010 Hb_005062_110--Hb_000085_260 Hb_005062_110--Hb_010042_030 Hb_001159_030 Hb_001159_030 Hb_005062_110--Hb_001159_030 Hb_000503_020 Hb_000503_020 Hb_005062_110--Hb_000503_020 Hb_000622_110 Hb_000622_110 Hb_005062_110--Hb_000622_110 Hb_002486_050 Hb_002486_050 Hb_005062_110--Hb_002486_050 Hb_000085_260--Hb_001159_030 Hb_000085_260--Hb_010042_030 Hb_000085_260--Hb_000503_020 Hb_000679_100 Hb_000679_100 Hb_000085_260--Hb_000679_100 Hb_000580_030 Hb_000580_030 Hb_000890_030--Hb_000580_030 Hb_012760_030 Hb_012760_030 Hb_000890_030--Hb_012760_030 Hb_016461_020 Hb_016461_020 Hb_000890_030--Hb_016461_020 Hb_000890_030--Hb_044486_020 Hb_000805_210 Hb_000805_210 Hb_000890_030--Hb_000805_210 Hb_000359_190 Hb_000359_190 Hb_044486_020--Hb_000359_190 Hb_000020_160 Hb_000020_160 Hb_044486_020--Hb_000020_160 Hb_001677_200 Hb_001677_200 Hb_044486_020--Hb_001677_200 Hb_010315_020 Hb_010315_020 Hb_044486_020--Hb_010315_020 Hb_086063_020 Hb_086063_020 Hb_044486_020--Hb_086063_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5713 31.0203 26.2661 49.8811 19.7585 23.4294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.36733 6.00423 9.20141 22.2806 17.964

CAGE analysis