Hb_000098_150

Information

Type -
Description -
Location Contig98: 158035-167153
Sequence    

Annotation

kegg
ID rcu:RCOM_0321820
description DNA helicase hus2, putative
nr
ID XP_002530679.1
description DNA helicase hus2, putative [Ricinus communis]
swissprot
ID Q8L840
description ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana GN=RECQL4A PE=2 SV=1
trembl
ID B9SXG0
description DNA helicase hus2, putative OS=Ricinus communis GN=RCOM_0321820 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent dna helicase q-like 4a isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64347: 156075-158113 , PASA_asmbl_64348: 158172-160097 , PASA_asmbl_64349: 160329-160960 , PASA_asmbl_64350: 161349-162851 , PASA_asmbl_64351: 163200-163765 , PASA_asmbl_64352: 163960-164681 , PASA_asmbl_64353: 164752-166313 , PASA_asmbl_64354: 166319-166811 , PASA_asmbl_64355: 166879-166994
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_150 0.0 - - DNA helicase hus2, putative [Ricinus communis]
2 Hb_004108_210 0.0632929541 - - phenazine biosynthesis protein, putative [Ricinus communis]
3 Hb_001863_160 0.0881617859 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
4 Hb_005144_210 0.092358907 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001221_580 0.0965867614 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
6 Hb_004712_190 0.1056598256 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
7 Hb_014231_020 0.1145232749 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
8 Hb_080147_020 0.1155119367 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
9 Hb_000296_010 0.1198955217 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
10 Hb_005903_020 0.1207875569 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
11 Hb_002686_150 0.125392148 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
12 Hb_003687_120 0.1291445134 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
13 Hb_006210_020 0.1309867072 - - PREDICTED: calcium sensing receptor, chloroplastic [Jatropha curcas]
14 Hb_001369_470 0.1310147851 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
15 Hb_000211_100 0.1310252315 - - PREDICTED: biotin synthase [Jatropha curcas]
16 Hb_000890_160 0.133406263 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
17 Hb_002913_010 0.139452147 - - PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]
18 Hb_011716_010 0.1422138159 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
19 Hb_000684_100 0.1430349091 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
20 Hb_000363_350 0.1438630306 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000098_150 Hb_000098_150 Hb_004108_210 Hb_004108_210 Hb_000098_150--Hb_004108_210 Hb_001863_160 Hb_001863_160 Hb_000098_150--Hb_001863_160 Hb_005144_210 Hb_005144_210 Hb_000098_150--Hb_005144_210 Hb_001221_580 Hb_001221_580 Hb_000098_150--Hb_001221_580 Hb_004712_190 Hb_004712_190 Hb_000098_150--Hb_004712_190 Hb_014231_020 Hb_014231_020 Hb_000098_150--Hb_014231_020 Hb_004108_210--Hb_005144_210 Hb_004108_210--Hb_001221_580 Hb_000296_010 Hb_000296_010 Hb_004108_210--Hb_000296_010 Hb_005903_020 Hb_005903_020 Hb_004108_210--Hb_005903_020 Hb_004108_210--Hb_004712_190 Hb_001863_160--Hb_014231_020 Hb_001863_160--Hb_005144_210 Hb_001863_160--Hb_004712_190 Hb_007741_130 Hb_007741_130 Hb_001863_160--Hb_007741_130 Hb_001191_080 Hb_001191_080 Hb_001863_160--Hb_001191_080 Hb_005144_210--Hb_004712_190 Hb_000703_160 Hb_000703_160 Hb_005144_210--Hb_000703_160 Hb_001369_470 Hb_001369_470 Hb_005144_210--Hb_001369_470 Hb_005144_210--Hb_014231_020 Hb_000890_160 Hb_000890_160 Hb_001221_580--Hb_000890_160 Hb_000567_090 Hb_000567_090 Hb_001221_580--Hb_000567_090 Hb_003428_090 Hb_003428_090 Hb_001221_580--Hb_003428_090 Hb_001221_580--Hb_005903_020 Hb_004712_190--Hb_014231_020 Hb_001500_120 Hb_001500_120 Hb_004712_190--Hb_001500_120 Hb_005977_030 Hb_005977_030 Hb_004712_190--Hb_005977_030 Hb_002686_080 Hb_002686_080 Hb_004712_190--Hb_002686_080 Hb_004712_190--Hb_001191_080 Hb_014231_020--Hb_000703_160 Hb_000009_220 Hb_000009_220 Hb_014231_020--Hb_000009_220 Hb_001307_190 Hb_001307_190 Hb_014231_020--Hb_001307_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.55599 1.15595 2.92135 1.27414 0.293773 0.297574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.538164 0.598441 0.300318 1.12716 0.473024

CAGE analysis