Hb_000098_180

Information

Type -
Description -
Location Contig98: 179146-186983
Sequence    

Annotation

kegg
ID rcu:RCOM_0321970
description hypothetical protein
nr
ID XP_012071310.1
description PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
swissprot
ID Q9NUJ3
description T-complex protein 11-like protein 1 OS=Homo sapiens GN=TCP11L1 PE=1 SV=1
trembl
ID A0A067KRU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04994 PE=4 SV=1
Gene Ontology
ID GO:0009506
description t-complex protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64362: 179198-186905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_180 0.0 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
2 Hb_004218_130 0.0808829613 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
3 Hb_000589_170 0.084584844 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
4 Hb_001117_080 0.0919278608 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
5 Hb_009296_020 0.0984518727 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
6 Hb_002259_220 0.0994892031 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
7 Hb_011188_010 0.1009755066 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
8 Hb_000979_140 0.1010498867 - - kinase family protein [Populus trichocarpa]
9 Hb_000197_180 0.1017392333 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
10 Hb_001729_020 0.1019940514 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
11 Hb_000375_060 0.1050376205 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
12 Hb_054865_050 0.1069258075 - - calcium-dependent protein kinase, putative [Ricinus communis]
13 Hb_000000_480 0.1069260426 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
14 Hb_002849_050 0.107315608 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
15 Hb_004883_020 0.1092364683 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
16 Hb_012762_040 0.1097481074 - - big map kinase/bmk, putative [Ricinus communis]
17 Hb_003680_220 0.1131903567 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
18 Hb_002432_050 0.1132500071 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
19 Hb_003226_090 0.1141498838 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
20 Hb_000567_090 0.1141780264 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000098_180 Hb_000098_180 Hb_004218_130 Hb_004218_130 Hb_000098_180--Hb_004218_130 Hb_000589_170 Hb_000589_170 Hb_000098_180--Hb_000589_170 Hb_001117_080 Hb_001117_080 Hb_000098_180--Hb_001117_080 Hb_009296_020 Hb_009296_020 Hb_000098_180--Hb_009296_020 Hb_002259_220 Hb_002259_220 Hb_000098_180--Hb_002259_220 Hb_011188_010 Hb_011188_010 Hb_000098_180--Hb_011188_010 Hb_001545_130 Hb_001545_130 Hb_004218_130--Hb_001545_130 Hb_018845_010 Hb_018845_010 Hb_004218_130--Hb_018845_010 Hb_003929_180 Hb_003929_180 Hb_004218_130--Hb_003929_180 Hb_000000_480 Hb_000000_480 Hb_004218_130--Hb_000000_480 Hb_002739_120 Hb_002739_120 Hb_004218_130--Hb_002739_120 Hb_015778_040 Hb_015778_040 Hb_000589_170--Hb_015778_040 Hb_001009_140 Hb_001009_140 Hb_000589_170--Hb_001009_140 Hb_023091_010 Hb_023091_010 Hb_000589_170--Hb_023091_010 Hb_013405_070 Hb_013405_070 Hb_000589_170--Hb_013405_070 Hb_000979_140 Hb_000979_140 Hb_000589_170--Hb_000979_140 Hb_086639_050 Hb_086639_050 Hb_001117_080--Hb_086639_050 Hb_002432_050 Hb_002432_050 Hb_001117_080--Hb_002432_050 Hb_000649_330 Hb_000649_330 Hb_001117_080--Hb_000649_330 Hb_000567_090 Hb_000567_090 Hb_001117_080--Hb_000567_090 Hb_002249_170 Hb_002249_170 Hb_001117_080--Hb_002249_170 Hb_003680_220 Hb_003680_220 Hb_009296_020--Hb_003680_220 Hb_000230_530 Hb_000230_530 Hb_009296_020--Hb_000230_530 Hb_000510_190 Hb_000510_190 Hb_009296_020--Hb_000510_190 Hb_005854_040 Hb_005854_040 Hb_009296_020--Hb_005854_040 Hb_002687_200 Hb_002687_200 Hb_009296_020--Hb_002687_200 Hb_001677_100 Hb_001677_100 Hb_009296_020--Hb_001677_100 Hb_004052_110 Hb_004052_110 Hb_002259_220--Hb_004052_110 Hb_001514_240 Hb_001514_240 Hb_002259_220--Hb_001514_240 Hb_002259_220--Hb_011188_010 Hb_009078_020 Hb_009078_020 Hb_002259_220--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_002259_220--Hb_001059_060 Hb_000477_070 Hb_000477_070 Hb_002259_220--Hb_000477_070 Hb_011188_010--Hb_009078_020 Hb_011188_010--Hb_001059_060 Hb_000300_560 Hb_000300_560 Hb_011188_010--Hb_000300_560 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_004577_010 Hb_004577_010 Hb_011188_010--Hb_004577_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54676 21.5131 41.0502 31.2991 3.89046 4.95462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.79766 5.74697 6.3654 21.7031 23.053

CAGE analysis