Hb_000098_190

Information

Type -
Description -
Location Contig98: 190116-192960
Sequence    

Annotation

kegg
ID cit:102626074
description hypothetical protein
nr
ID XP_012071311.1
description PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L421
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04996 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64363: 190072-191422
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_190 0.0 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
2 Hb_002784_040 0.0762514265 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
3 Hb_002107_130 0.0898137779 - - protein with unknown function [Ricinus communis]
4 Hb_000714_030 0.0940021196 - - Nucleosome assembly [Gossypium arboreum]
5 Hb_008578_010 0.101008245 - - 30S ribosomal protein S19, putative [Ricinus communis]
6 Hb_006816_150 0.1022687272 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
7 Hb_000933_050 0.1034890427 - - protein binding protein, putative [Ricinus communis]
8 Hb_000154_080 0.1082880363 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
9 Hb_003878_190 0.112417519 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
10 Hb_003001_060 0.1131757956 - - wound-responsive family protein [Populus trichocarpa]
11 Hb_001369_650 0.1162387426 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
12 Hb_030565_080 0.1163854607 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
13 Hb_003640_060 0.1171826084 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
14 Hb_003025_020 0.1172147156 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_052135_030 0.1175068089 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
16 Hb_021443_070 0.1179384651 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
17 Hb_003551_020 0.1189155401 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
18 Hb_003752_080 0.118943751 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
19 Hb_003086_070 0.1199438149 - - PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Jatropha curcas]
20 Hb_000019_230 0.120333065 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000098_190 Hb_000098_190 Hb_002784_040 Hb_002784_040 Hb_000098_190--Hb_002784_040 Hb_002107_130 Hb_002107_130 Hb_000098_190--Hb_002107_130 Hb_000714_030 Hb_000714_030 Hb_000098_190--Hb_000714_030 Hb_008578_010 Hb_008578_010 Hb_000098_190--Hb_008578_010 Hb_006816_150 Hb_006816_150 Hb_000098_190--Hb_006816_150 Hb_000933_050 Hb_000933_050 Hb_000098_190--Hb_000933_050 Hb_002784_040--Hb_006816_150 Hb_002784_040--Hb_008578_010 Hb_001369_650 Hb_001369_650 Hb_002784_040--Hb_001369_650 Hb_001623_330 Hb_001623_330 Hb_002784_040--Hb_001623_330 Hb_003001_060 Hb_003001_060 Hb_002784_040--Hb_003001_060 Hb_000928_240 Hb_000928_240 Hb_002107_130--Hb_000928_240 Hb_003878_190 Hb_003878_190 Hb_002107_130--Hb_003878_190 Hb_001184_090 Hb_001184_090 Hb_002107_130--Hb_001184_090 Hb_002006_020 Hb_002006_020 Hb_002107_130--Hb_002006_020 Hb_001477_110 Hb_001477_110 Hb_002107_130--Hb_001477_110 Hb_156635_030 Hb_156635_030 Hb_002107_130--Hb_156635_030 Hb_000742_140 Hb_000742_140 Hb_000714_030--Hb_000742_140 Hb_000457_110 Hb_000457_110 Hb_000714_030--Hb_000457_110 Hb_009767_120 Hb_009767_120 Hb_000714_030--Hb_009767_120 Hb_000933_180 Hb_000933_180 Hb_000714_030--Hb_000933_180 Hb_000465_040 Hb_000465_040 Hb_000714_030--Hb_000465_040 Hb_008578_010--Hb_006816_150 Hb_001021_230 Hb_001021_230 Hb_008578_010--Hb_001021_230 Hb_008578_010--Hb_000742_140 Hb_008578_010--Hb_001369_650 Hb_010810_050 Hb_010810_050 Hb_006816_150--Hb_010810_050 Hb_000019_230 Hb_000019_230 Hb_006816_150--Hb_000019_230 Hb_006816_150--Hb_001369_650 Hb_003120_060 Hb_003120_060 Hb_006816_150--Hb_003120_060 Hb_004032_060 Hb_004032_060 Hb_000933_050--Hb_004032_060 Hb_000933_050--Hb_000714_030 Hb_001951_260 Hb_001951_260 Hb_000933_050--Hb_001951_260 Hb_000670_020 Hb_000670_020 Hb_000933_050--Hb_000670_020 Hb_000001_110 Hb_000001_110 Hb_000933_050--Hb_000001_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1503 8.29384 11.0157 7.4796 43.5186 26.7618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.4939 41.602 9.54079 10.3889 5.15723

CAGE analysis