Hb_000098_200

Information

Type -
Description -
Location Contig98: 192059-198012
Sequence    

Annotation

kegg
ID pop:POPTR_0001s21950g
description hypothetical protein
nr
ID XP_011012832.1
description PREDICTED: serine hydroxymethyltransferase 7-like isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067L2W3
description Serine hydroxymethyltransferase OS=Jatropha curcas GN=JCGZ_04997 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64364: 192234-193592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_200 0.0 - - PREDICTED: serine hydroxymethyltransferase 7-like isoform X2 [Populus euphratica]
2 Hb_000235_050 0.1417127187 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004746_010 0.1501887542 - - aldo/keto reductase, putative [Ricinus communis]
4 Hb_000755_060 0.1541457754 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104424740 [Eucalyptus grandis]
5 Hb_000029_440 0.1554055993 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X2 [Vitis vinifera]
6 Hb_000401_010 0.1604121546 - - SAB, putative [Ricinus communis]
7 Hb_135959_010 0.1608059426 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
8 Hb_002477_040 0.1614063663 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao]
9 Hb_002284_100 0.1614767028 - - ribophorin, putative [Ricinus communis]
10 Hb_103688_010 0.1626130457 - - PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
11 Hb_004602_020 0.1630454974 transcription factor TF Family: SET PREDICTED: N-lysine methyltransferase setd6 isoform X2 [Jatropha curcas]
12 Hb_000849_080 0.1645150291 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]
13 Hb_000248_100 0.1661440496 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
14 Hb_024570_040 0.1698443334 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
15 Hb_006816_230 0.1708759292 - - protein disulfide isomerase, putative [Ricinus communis]
16 Hb_001018_060 0.1711964671 - - hypothetical protein B456_001G028000 [Gossypium raimondii]
17 Hb_003058_200 0.1723458406 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
18 Hb_002808_020 0.1725824669 - - PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
19 Hb_000254_070 0.1727140542 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
20 Hb_000019_170 0.1739326387 - - PREDICTED: alpha-mannosidase [Jatropha curcas]

Gene co-expression network

sample Hb_000098_200 Hb_000098_200 Hb_000235_050 Hb_000235_050 Hb_000098_200--Hb_000235_050 Hb_004746_010 Hb_004746_010 Hb_000098_200--Hb_004746_010 Hb_000755_060 Hb_000755_060 Hb_000098_200--Hb_000755_060 Hb_000029_440 Hb_000029_440 Hb_000098_200--Hb_000029_440 Hb_000401_010 Hb_000401_010 Hb_000098_200--Hb_000401_010 Hb_135959_010 Hb_135959_010 Hb_000098_200--Hb_135959_010 Hb_000235_050--Hb_000401_010 Hb_003227_010 Hb_003227_010 Hb_000235_050--Hb_003227_010 Hb_010872_040 Hb_010872_040 Hb_000235_050--Hb_010872_040 Hb_000248_100 Hb_000248_100 Hb_000235_050--Hb_000248_100 Hb_005970_010 Hb_005970_010 Hb_000235_050--Hb_005970_010 Hb_008053_060 Hb_008053_060 Hb_000235_050--Hb_008053_060 Hb_000984_140 Hb_000984_140 Hb_004746_010--Hb_000984_140 Hb_001434_020 Hb_001434_020 Hb_004746_010--Hb_001434_020 Hb_004204_210 Hb_004204_210 Hb_004746_010--Hb_004204_210 Hb_001677_100 Hb_001677_100 Hb_004746_010--Hb_001677_100 Hb_024758_020 Hb_024758_020 Hb_004746_010--Hb_024758_020 Hb_005772_030 Hb_005772_030 Hb_004746_010--Hb_005772_030 Hb_001227_100 Hb_001227_100 Hb_000755_060--Hb_001227_100 Hb_000755_060--Hb_000029_440 Hb_001080_130 Hb_001080_130 Hb_000755_060--Hb_001080_130 Hb_012180_010 Hb_012180_010 Hb_000755_060--Hb_012180_010 Hb_000720_080 Hb_000720_080 Hb_000755_060--Hb_000720_080 Hb_030565_110 Hb_030565_110 Hb_000029_440--Hb_030565_110 Hb_002072_010 Hb_002072_010 Hb_000029_440--Hb_002072_010 Hb_000254_070 Hb_000254_070 Hb_000029_440--Hb_000254_070 Hb_000003_310 Hb_000003_310 Hb_000029_440--Hb_000003_310 Hb_004330_080 Hb_004330_080 Hb_000029_440--Hb_004330_080 Hb_069619_010 Hb_069619_010 Hb_000029_440--Hb_069619_010 Hb_003050_150 Hb_003050_150 Hb_000401_010--Hb_003050_150 Hb_002235_190 Hb_002235_190 Hb_000401_010--Hb_002235_190 Hb_000205_280 Hb_000205_280 Hb_000401_010--Hb_000205_280 Hb_000297_030 Hb_000297_030 Hb_000401_010--Hb_000297_030 Hb_002025_270 Hb_002025_270 Hb_000401_010--Hb_002025_270 Hb_002851_010 Hb_002851_010 Hb_135959_010--Hb_002851_010 Hb_000157_070 Hb_000157_070 Hb_135959_010--Hb_000157_070 Hb_020805_180 Hb_020805_180 Hb_135959_010--Hb_020805_180 Hb_158845_060 Hb_158845_060 Hb_135959_010--Hb_158845_060 Hb_002027_190 Hb_002027_190 Hb_135959_010--Hb_002027_190 Hb_007747_170 Hb_007747_170 Hb_135959_010--Hb_007747_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.431324 1.15802 2.28137 3.72707 2.23264 1.32784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.324658 0.935471 0.147687 4.19722 2.12311

CAGE analysis