Hb_000098_230

Information

Type -
Description -
Location Contig98: 221415-228865
Sequence    

Annotation

kegg
ID rcu:RCOM_0406880
description Potassium channel AKT2/3, putative
nr
ID XP_002529533.1
description Potassium channel AKT2/3, putative [Ricinus communis]
swissprot
ID Q38898
description Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1
trembl
ID B9SU64
description Potassium channel AKT2/3, putative OS=Ricinus communis GN=RCOM_0406880 PE=4 SV=1
Gene Ontology
ID GO:0005249
description potassium channel akt2 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64367: 221420-224635 , PASA_asmbl_64368: 228709-228982
cDNA
(Sanger)
(ID:Location)		 047_P17.ab1: 223210-224635

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_230 0.0 - - Potassium channel AKT2/3, putative [Ricinus communis]
2 Hb_001541_170 0.066536743 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
3 Hb_003582_030 0.073371056 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
4 Hb_007919_010 0.0735866645 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001418_050 0.0806850265 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
6 Hb_000422_060 0.0875788347 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
7 Hb_007441_100 0.0879070189 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
8 Hb_002186_170 0.0884503488 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
9 Hb_000087_190 0.0886834154 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
10 Hb_001500_020 0.0935504983 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000614_120 0.0939836469 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
12 Hb_006351_050 0.0967728004 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
13 Hb_000646_040 0.0972927259 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
14 Hb_012217_010 0.0987872933 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
15 Hb_000847_110 0.1003585443 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000175_370 0.1023070126 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
17 Hb_001579_160 0.1026888543 - - PREDICTED: kininogen-1-like [Jatropha curcas]
18 Hb_000120_560 0.1033760259 - - protein with unknown function [Ricinus communis]
19 Hb_180088_010 0.1050156718 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000378_030 0.1056406267 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000098_230 Hb_000098_230 Hb_001541_170 Hb_001541_170 Hb_000098_230--Hb_001541_170 Hb_003582_030 Hb_003582_030 Hb_000098_230--Hb_003582_030 Hb_007919_010 Hb_007919_010 Hb_000098_230--Hb_007919_010 Hb_001418_050 Hb_001418_050 Hb_000098_230--Hb_001418_050 Hb_000422_060 Hb_000422_060 Hb_000098_230--Hb_000422_060 Hb_007441_100 Hb_007441_100 Hb_000098_230--Hb_007441_100 Hb_001579_160 Hb_001579_160 Hb_001541_170--Hb_001579_160 Hb_005588_050 Hb_005588_050 Hb_001541_170--Hb_005588_050 Hb_009421_060 Hb_009421_060 Hb_001541_170--Hb_009421_060 Hb_001541_170--Hb_007919_010 Hb_004158_040 Hb_004158_040 Hb_001541_170--Hb_004158_040 Hb_000087_190 Hb_000087_190 Hb_003582_030--Hb_000087_190 Hb_000646_040 Hb_000646_040 Hb_003582_030--Hb_000646_040 Hb_000030_230 Hb_000030_230 Hb_003582_030--Hb_000030_230 Hb_002186_170 Hb_002186_170 Hb_003582_030--Hb_002186_170 Hb_000197_260 Hb_000197_260 Hb_003582_030--Hb_000197_260 Hb_180088_010 Hb_180088_010 Hb_007919_010--Hb_180088_010 Hb_006351_050 Hb_006351_050 Hb_007919_010--Hb_006351_050 Hb_007919_010--Hb_000422_060 Hb_001500_020 Hb_001500_020 Hb_007919_010--Hb_001500_020 Hb_007919_010--Hb_001579_160 Hb_001418_050--Hb_007441_100 Hb_000847_110 Hb_000847_110 Hb_001418_050--Hb_000847_110 Hb_000378_030 Hb_000378_030 Hb_001418_050--Hb_000378_030 Hb_001418_050--Hb_001541_170 Hb_001418_050--Hb_001500_020 Hb_032299_020 Hb_032299_020 Hb_000422_060--Hb_032299_020 Hb_000349_280 Hb_000349_280 Hb_000422_060--Hb_000349_280 Hb_000422_060--Hb_002186_170 Hb_001584_250 Hb_001584_250 Hb_000422_060--Hb_001584_250 Hb_012217_010 Hb_012217_010 Hb_007441_100--Hb_012217_010 Hb_007441_100--Hb_000847_110 Hb_007441_100--Hb_000378_030 Hb_007441_100--Hb_001541_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105937 3.84833 2.3566 20.9421 0.0992778 0.087655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.513322 3.03444

CAGE analysis