Hb_000098_280

Information

Type -
Description -
Location Contig98: 285559-285944
Sequence    

Annotation

kegg
ID egr:104450759
description pentatricopeptide repeat-containing protein At1g33350
nr
ID XP_012072629.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]
swissprot
ID Q9C501
description Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
trembl
ID A0A067KNV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06694 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64375: 256087-294348
cDNA
(Sanger)
(ID:Location)		 025_I04.ab1: 256124-294228 , 032_F13.ab1: 256203-294228

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_280 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]
2 Hb_000953_150 0.0066537104 - - -
3 Hb_080765_020 0.0142175296 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_046727_010 0.0174052767 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_007008_020 0.0378331549 - - -
6 Hb_000100_050 0.062874164 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
7 Hb_011978_010 0.0636117277 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
8 Hb_000375_380 0.063970344 - - -
9 Hb_004324_380 0.0674375836 - - -
10 Hb_007963_050 0.072131924 - - -
11 Hb_009693_040 0.0788178944 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Brassica rapa]
12 Hb_027393_020 0.079363213 - - -
13 Hb_003607_030 0.0894032101 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
14 Hb_002163_060 0.1582722313 - - -
15 Hb_002805_320 0.1704997279 - - -
16 Hb_140049_070 0.1744650274 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000038_160 0.1755006027 - - putative gag protein [Coffea canephora]
18 Hb_000926_220 0.1846001716 - - -
19 Hb_017836_010 0.1956816295 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
20 Hb_000922_310 0.2120135782 transcription factor TF Family: MYB PREDICTED: transcription factor MYB98-like [Jatropha curcas]

Gene co-expression network

sample Hb_000098_280 Hb_000098_280 Hb_000953_150 Hb_000953_150 Hb_000098_280--Hb_000953_150 Hb_080765_020 Hb_080765_020 Hb_000098_280--Hb_080765_020 Hb_046727_010 Hb_046727_010 Hb_000098_280--Hb_046727_010 Hb_007008_020 Hb_007008_020 Hb_000098_280--Hb_007008_020 Hb_000100_050 Hb_000100_050 Hb_000098_280--Hb_000100_050 Hb_011978_010 Hb_011978_010 Hb_000098_280--Hb_011978_010 Hb_000953_150--Hb_080765_020 Hb_000953_150--Hb_046727_010 Hb_000953_150--Hb_007008_020 Hb_007963_050 Hb_007963_050 Hb_000953_150--Hb_007963_050 Hb_000953_150--Hb_000100_050 Hb_080765_020--Hb_046727_010 Hb_080765_020--Hb_007008_020 Hb_080765_020--Hb_000100_050 Hb_080765_020--Hb_011978_010 Hb_046727_010--Hb_007008_020 Hb_046727_010--Hb_000100_050 Hb_046727_010--Hb_011978_010 Hb_007008_020--Hb_000100_050 Hb_007008_020--Hb_011978_010 Hb_000375_380 Hb_000375_380 Hb_007008_020--Hb_000375_380 Hb_004324_380 Hb_004324_380 Hb_007008_020--Hb_004324_380 Hb_000100_050--Hb_011978_010 Hb_000100_050--Hb_000375_380 Hb_000100_050--Hb_004324_380 Hb_027393_020 Hb_027393_020 Hb_000100_050--Hb_027393_020 Hb_011978_010--Hb_000375_380 Hb_011978_010--Hb_004324_380 Hb_011978_010--Hb_027393_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.204657 0 0 0 0.14213 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis