Hb_000098_290

Information

Type -
Description -
Location Contig98: 288794-290500
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64375: 256087-294348
cDNA
(Sanger)
(ID:Location)		 025_I04.ab1: 256124-294228 , 032_F13.ab1: 256203-294228

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_290 0.0 - - -
2 Hb_057098_010 0.212139374 - - -
3 Hb_037063_010 0.2455614677 - - -
4 Hb_011249_050 0.2456816407 - - -
5 Hb_005539_020 0.2535562449 - - -
6 Hb_002400_360 0.2547481744 - - heparanase, putative [Ricinus communis]
7 Hb_010407_170 0.2636710025 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
8 Hb_000567_040 0.2657320046 - - PREDICTED: uncharacterized protein LOC105649657 [Jatropha curcas]
9 Hb_000679_060 0.2661787562 - - ADP,ATP carrier protein, putative [Ricinus communis]
10 Hb_089497_010 0.2713960992 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
11 Hb_003322_010 0.2715836353 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
12 Hb_002346_010 0.2739480405 - - -
13 Hb_000526_030 0.2747720606 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
14 Hb_008983_010 0.2752920131 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_068804_040 0.2783005321 - - -
16 Hb_001541_040 0.2788131785 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000451_070 0.2803318977 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_112023_010 0.2806070009 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
19 Hb_009780_080 0.2830215091 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_000796_240 0.284724937 - - -

Gene co-expression network

sample Hb_000098_290 Hb_000098_290 Hb_057098_010 Hb_057098_010 Hb_000098_290--Hb_057098_010 Hb_037063_010 Hb_037063_010 Hb_000098_290--Hb_037063_010 Hb_011249_050 Hb_011249_050 Hb_000098_290--Hb_011249_050 Hb_005539_020 Hb_005539_020 Hb_000098_290--Hb_005539_020 Hb_002400_360 Hb_002400_360 Hb_000098_290--Hb_002400_360 Hb_010407_170 Hb_010407_170 Hb_000098_290--Hb_010407_170 Hb_057098_010--Hb_037063_010 Hb_001638_090 Hb_001638_090 Hb_057098_010--Hb_001638_090 Hb_057098_010--Hb_005539_020 Hb_057098_010--Hb_011249_050 Hb_000796_240 Hb_000796_240 Hb_057098_010--Hb_000796_240 Hb_005709_010 Hb_005709_010 Hb_037063_010--Hb_005709_010 Hb_037063_010--Hb_010407_170 Hb_004785_040 Hb_004785_040 Hb_037063_010--Hb_004785_040 Hb_011861_120 Hb_011861_120 Hb_037063_010--Hb_011861_120 Hb_001541_040 Hb_001541_040 Hb_037063_010--Hb_001541_040 Hb_068804_040 Hb_068804_040 Hb_011249_050--Hb_068804_040 Hb_058722_010 Hb_058722_010 Hb_011249_050--Hb_058722_010 Hb_000679_060 Hb_000679_060 Hb_011249_050--Hb_000679_060 Hb_011861_060 Hb_011861_060 Hb_011249_050--Hb_011861_060 Hb_000526_030 Hb_000526_030 Hb_005539_020--Hb_000526_030 Hb_052764_030 Hb_052764_030 Hb_005539_020--Hb_052764_030 Hb_000023_350 Hb_000023_350 Hb_005539_020--Hb_000023_350 Hb_000802_190 Hb_000802_190 Hb_005539_020--Hb_000802_190 Hb_002631_040 Hb_002631_040 Hb_005539_020--Hb_002631_040 Hb_004319_070 Hb_004319_070 Hb_005539_020--Hb_004319_070 Hb_002400_360--Hb_000526_030 Hb_002400_360--Hb_005539_020 Hb_000169_170 Hb_000169_170 Hb_002400_360--Hb_000169_170 Hb_002400_360--Hb_000023_350 Hb_127599_010 Hb_127599_010 Hb_002400_360--Hb_127599_010 Hb_130389_010 Hb_130389_010 Hb_002400_360--Hb_130389_010 Hb_001104_110 Hb_001104_110 Hb_010407_170--Hb_001104_110 Hb_001268_120 Hb_001268_120 Hb_010407_170--Hb_001268_120 Hb_000905_170 Hb_000905_170 Hb_010407_170--Hb_000905_170 Hb_000009_330 Hb_000009_330 Hb_010407_170--Hb_000009_330 Hb_006538_080 Hb_006538_080 Hb_010407_170--Hb_006538_080 Hb_010407_170--Hb_002631_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.395363 1.24543 0.656134 0.27851 0.854264 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18412 0.761346 0 1.21745 0.162553

CAGE analysis