Hb_000098_300

Information

Type -
Description -
Location Contig98: 292053-292480
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64375: 256087-294348
cDNA
(Sanger)
(ID:Location)		 025_I04.ab1: 256124-294228 , 032_F13.ab1: 256203-294228

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_300 0.0 - - -
2 Hb_141296_010 0.1717974428 - - -
3 Hb_000679_200 0.1768399973 - - EIN3-binding F box protein 1 [Theobroma cacao]
4 Hb_022891_010 0.1816910434 - - chitinase-like protein [Hevea brasiliensis]
5 Hb_007333_040 0.1899243859 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
6 Hb_060391_010 0.1968114368 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_033385_010 0.2044908099 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
8 Hb_011206_020 0.2111512946 - - -
9 Hb_002815_050 0.2129444234 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
10 Hb_003030_040 0.2220764474 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
11 Hb_068014_010 0.2239240578 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
12 Hb_009119_020 0.226299582 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
13 Hb_130367_010 0.2308370859 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
14 Hb_032258_020 0.2308650522 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]
15 Hb_007083_020 0.2313629034 - - hypothetical protein F775_15403 [Aegilops tauschii]
16 Hb_000215_310 0.2318837443 - - -
17 Hb_005318_020 0.2323354773 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
18 Hb_060458_010 0.2359474732 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005271_230 0.2360954914 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
20 Hb_019053_010 0.2364045886 - - -

Gene co-expression network

sample Hb_000098_300 Hb_000098_300 Hb_141296_010 Hb_141296_010 Hb_000098_300--Hb_141296_010 Hb_000679_200 Hb_000679_200 Hb_000098_300--Hb_000679_200 Hb_022891_010 Hb_022891_010 Hb_000098_300--Hb_022891_010 Hb_007333_040 Hb_007333_040 Hb_000098_300--Hb_007333_040 Hb_060391_010 Hb_060391_010 Hb_000098_300--Hb_060391_010 Hb_033385_010 Hb_033385_010 Hb_000098_300--Hb_033385_010 Hb_060458_010 Hb_060458_010 Hb_141296_010--Hb_060458_010 Hb_138462_010 Hb_138462_010 Hb_141296_010--Hb_138462_010 Hb_141296_010--Hb_060391_010 Hb_141296_010--Hb_007333_040 Hb_006960_010 Hb_006960_010 Hb_141296_010--Hb_006960_010 Hb_000679_200--Hb_060391_010 Hb_026337_010 Hb_026337_010 Hb_000679_200--Hb_026337_010 Hb_000679_200--Hb_007333_040 Hb_004724_120 Hb_004724_120 Hb_000679_200--Hb_004724_120 Hb_003972_040 Hb_003972_040 Hb_000679_200--Hb_003972_040 Hb_130367_010 Hb_130367_010 Hb_022891_010--Hb_130367_010 Hb_002815_050 Hb_002815_050 Hb_022891_010--Hb_002815_050 Hb_000034_090 Hb_000034_090 Hb_022891_010--Hb_000034_090 Hb_007188_030 Hb_007188_030 Hb_022891_010--Hb_007188_030 Hb_003030_040 Hb_003030_040 Hb_022891_010--Hb_003030_040 Hb_007333_040--Hb_033385_010 Hb_106415_010 Hb_106415_010 Hb_007333_040--Hb_106415_010 Hb_009119_020 Hb_009119_020 Hb_007333_040--Hb_009119_020 Hb_054586_020 Hb_054586_020 Hb_007333_040--Hb_054586_020 Hb_181328_010 Hb_181328_010 Hb_007333_040--Hb_181328_010 Hb_019053_010 Hb_019053_010 Hb_007333_040--Hb_019053_010 Hb_102591_010 Hb_102591_010 Hb_060391_010--Hb_102591_010 Hb_165402_010 Hb_165402_010 Hb_060391_010--Hb_165402_010 Hb_050034_010 Hb_050034_010 Hb_060391_010--Hb_050034_010 Hb_007456_020 Hb_007456_020 Hb_060391_010--Hb_007456_020 Hb_000366_020 Hb_000366_020 Hb_060391_010--Hb_000366_020 Hb_033385_010--Hb_106415_010 Hb_068014_010 Hb_068014_010 Hb_033385_010--Hb_068014_010 Hb_033385_010--Hb_009119_020 Hb_099878_050 Hb_099878_050 Hb_033385_010--Hb_099878_050 Hb_013358_090 Hb_013358_090 Hb_033385_010--Hb_013358_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.61186 10.7906 3.39697 57.5196 3.12091 86.0537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49371 6.54147 5.82579 37.7628 6.97287

CAGE analysis