Hb_000099_050

Information

Type -
Description -
Location Contig99: 72982-74978
Sequence    

Annotation

kegg
ID rcu:RCOM_1689780
description hypothetical protein
nr
ID XP_002509898.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCL4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1689780 PE=4 SV=1
Gene Ontology
ID GO:0016746
description acyl-coenzyme a:6-aminopenicillanic-acid-acyltransferase 29 kda subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64718: 72938-75297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006916_080 0.1303033732 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
3 Hb_003605_060 0.1316271486 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
4 Hb_002485_050 0.1335894598 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
5 Hb_002636_030 0.1375176673 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
6 Hb_121089_010 0.137920288 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
7 Hb_015175_040 0.141820235 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000479_210 0.1439352014 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
9 Hb_010557_010 0.146112992 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
10 Hb_091433_050 0.1494546853 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
11 Hb_000856_280 0.1495301006 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
12 Hb_009296_030 0.150651187 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
13 Hb_000442_070 0.1508347872 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
14 Hb_000803_170 0.1531866974 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
15 Hb_058620_080 0.1544911362 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
16 Hb_000834_060 0.1574860664 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_009393_130 0.1600452844 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
18 Hb_074548_010 0.161161392 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000089_140 0.1616496844 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
20 Hb_000684_200 0.162353093 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000099_050 Hb_000099_050 Hb_006916_080 Hb_006916_080 Hb_000099_050--Hb_006916_080 Hb_003605_060 Hb_003605_060 Hb_000099_050--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_000099_050--Hb_002485_050 Hb_002636_030 Hb_002636_030 Hb_000099_050--Hb_002636_030 Hb_121089_010 Hb_121089_010 Hb_000099_050--Hb_121089_010 Hb_015175_040 Hb_015175_040 Hb_000099_050--Hb_015175_040 Hb_002307_190 Hb_002307_190 Hb_006916_080--Hb_002307_190 Hb_000393_040 Hb_000393_040 Hb_006916_080--Hb_000393_040 Hb_021531_010 Hb_021531_010 Hb_006916_080--Hb_021531_010 Hb_001969_100 Hb_001969_100 Hb_006916_080--Hb_001969_100 Hb_006916_080--Hb_002485_050 Hb_003605_060--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_003605_060--Hb_000856_280 Hb_074548_010 Hb_074548_010 Hb_003605_060--Hb_074548_010 Hb_009393_130 Hb_009393_130 Hb_003605_060--Hb_009393_130 Hb_007803_040 Hb_007803_040 Hb_003605_060--Hb_007803_040 Hb_003605_060--Hb_002636_030 Hb_002485_050--Hb_007803_040 Hb_002485_050--Hb_000856_280 Hb_000544_070 Hb_000544_070 Hb_002485_050--Hb_000544_070 Hb_002485_050--Hb_074548_010 Hb_002485_050--Hb_009393_130 Hb_091433_050 Hb_091433_050 Hb_002636_030--Hb_091433_050 Hb_000948_120 Hb_000948_120 Hb_002636_030--Hb_000948_120 Hb_002636_030--Hb_000856_280 Hb_002636_030--Hb_074548_010 Hb_010098_040 Hb_010098_040 Hb_002636_030--Hb_010098_040 Hb_121089_010--Hb_000948_120 Hb_003915_020 Hb_003915_020 Hb_121089_010--Hb_003915_020 Hb_000120_490 Hb_000120_490 Hb_121089_010--Hb_000120_490 Hb_003680_060 Hb_003680_060 Hb_121089_010--Hb_003680_060 Hb_004102_080 Hb_004102_080 Hb_121089_010--Hb_004102_080 Hb_001227_140 Hb_001227_140 Hb_121089_010--Hb_001227_140 Hb_006583_030 Hb_006583_030 Hb_015175_040--Hb_006583_030 Hb_005488_160 Hb_005488_160 Hb_015175_040--Hb_005488_160 Hb_010557_010 Hb_010557_010 Hb_015175_040--Hb_010557_010 Hb_000442_070 Hb_000442_070 Hb_015175_040--Hb_000442_070 Hb_002411_100 Hb_002411_100 Hb_015175_040--Hb_002411_100 Hb_000302_230 Hb_000302_230 Hb_015175_040--Hb_000302_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.2021 1.19393 0.310169 0.0385664 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1364 0.143048 0.066185 0.10047 1.76632

CAGE analysis