Hb_000099_080

Information

Type -
Description -
Location Contig99: 83772-87349
Sequence    

Annotation

kegg
ID rcu:RCOM_1312260
description kinesin light chain, putative
nr
ID XP_002518863.1
description kinesin light chain, putative [Ricinus communis]
swissprot
ID Q6AZT7
description Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1
trembl
ID B9RYP4
description Kinesin light chain, putative OS=Ricinus communis GN=RCOM_1312260 PE=4 SV=1
Gene Ontology
ID GO:0005886
description kinesin light

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64722: 83807-87558 , PASA_asmbl_64723: 86400-86954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_080 0.0 - - kinesin light chain, putative [Ricinus communis]
2 Hb_010128_080 0.0603646337 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
3 Hb_007691_030 0.0604753801 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
4 Hb_010712_030 0.0614094818 - - conserved hypothetical protein [Ricinus communis]
5 Hb_031527_040 0.0631617643 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
6 Hb_000395_190 0.063696812 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
7 Hb_000563_320 0.0681941432 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
8 Hb_035398_020 0.0684850139 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
9 Hb_001097_050 0.0693027219 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_001538_130 0.0707596463 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007416_180 0.0718264208 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
12 Hb_001248_060 0.0720053812 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005144_160 0.0737525925 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
14 Hb_000580_180 0.0743401456 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001408_040 0.0758441133 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
16 Hb_002078_130 0.0761645928 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
17 Hb_001242_060 0.0765839742 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
18 Hb_003428_030 0.0772268034 - - tRNA, putative [Ricinus communis]
19 Hb_000181_070 0.0775265521 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000866_220 0.0781908319 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]

Gene co-expression network

sample Hb_000099_080 Hb_000099_080 Hb_010128_080 Hb_010128_080 Hb_000099_080--Hb_010128_080 Hb_007691_030 Hb_007691_030 Hb_000099_080--Hb_007691_030 Hb_010712_030 Hb_010712_030 Hb_000099_080--Hb_010712_030 Hb_031527_040 Hb_031527_040 Hb_000099_080--Hb_031527_040 Hb_000395_190 Hb_000395_190 Hb_000099_080--Hb_000395_190 Hb_000563_320 Hb_000563_320 Hb_000099_080--Hb_000563_320 Hb_010128_080--Hb_000395_190 Hb_015934_040 Hb_015934_040 Hb_010128_080--Hb_015934_040 Hb_000866_220 Hb_000866_220 Hb_010128_080--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_010128_080--Hb_000003_250 Hb_089032_040 Hb_089032_040 Hb_010128_080--Hb_089032_040 Hb_003428_030 Hb_003428_030 Hb_007691_030--Hb_003428_030 Hb_005144_160 Hb_005144_160 Hb_007691_030--Hb_005144_160 Hb_002739_100 Hb_002739_100 Hb_007691_030--Hb_002739_100 Hb_000876_070 Hb_000876_070 Hb_007691_030--Hb_000876_070 Hb_003092_040 Hb_003092_040 Hb_007691_030--Hb_003092_040 Hb_000580_180 Hb_000580_180 Hb_007691_030--Hb_000580_180 Hb_004310_020 Hb_004310_020 Hb_010712_030--Hb_004310_020 Hb_000125_130 Hb_000125_130 Hb_010712_030--Hb_000125_130 Hb_000152_380 Hb_000152_380 Hb_010712_030--Hb_000152_380 Hb_001408_040 Hb_001408_040 Hb_010712_030--Hb_001408_040 Hb_007059_010 Hb_007059_010 Hb_010712_030--Hb_007059_010 Hb_001242_060 Hb_001242_060 Hb_031527_040--Hb_001242_060 Hb_031527_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_031527_040--Hb_000016_250 Hb_007416_180 Hb_007416_180 Hb_031527_040--Hb_007416_180 Hb_001157_040 Hb_001157_040 Hb_031527_040--Hb_001157_040 Hb_000260_270 Hb_000260_270 Hb_000395_190--Hb_000260_270 Hb_005731_130 Hb_005731_130 Hb_000395_190--Hb_005731_130 Hb_000395_190--Hb_089032_040 Hb_002078_130 Hb_002078_130 Hb_000395_190--Hb_002078_130 Hb_000563_320--Hb_000016_250 Hb_000563_320--Hb_001157_040 Hb_005779_060 Hb_005779_060 Hb_000563_320--Hb_005779_060 Hb_000563_320--Hb_001242_060 Hb_011995_010 Hb_011995_010 Hb_000563_320--Hb_011995_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.328 53.281 23.5721 50.6057 54.2715 56.9672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.1786 68.7103 54.5737 37.9693 28.9453

CAGE analysis