Hb_000099_110

Information

Type -
Description -
Location Contig99: 149959-150525
Sequence    

Annotation

kegg
ID cic:CICLE_v10022439mg
description hypothetical protein
nr
ID XP_012086793.1
description PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
swissprot
ID P13240
description Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=1 SV=2
trembl
ID A0A0D2ML01
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G083600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_110 0.0 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
2 Hb_012545_020 0.0250468053 - - PREDICTED: uncharacterized protein LOC105633903 [Jatropha curcas]
3 Hb_000277_040 0.0493386131 - - -
4 Hb_010812_080 0.0655935647 - - PREDICTED: methylesterase 17 [Jatropha curcas]
5 Hb_000087_110 0.0667819089 - - conserved hypothetical protein [Ricinus communis]
6 Hb_093541_010 0.0668006864 - - conserved hypothetical protein [Ricinus communis]
7 Hb_101724_010 0.0668340997 - - glutamate receptor family protein [Populus trichocarpa]
8 Hb_005081_050 0.0671626134 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
9 Hb_006198_160 0.0672486984 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
10 Hb_073680_010 0.0673845597 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
11 Hb_157950_010 0.0673996957 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
12 Hb_015447_010 0.0675438053 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
13 Hb_003424_040 0.067586388 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
14 Hb_001922_140 0.0678219927 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003849_210 0.0687601368 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
16 Hb_010128_140 0.0694087333 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
17 Hb_001552_010 0.0704310218 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005356_020 0.0706654401 - - glutaredoxin, grx, putative [Ricinus communis]
19 Hb_149495_010 0.0708774382 - - putative starch phosphorylase, partial [Sorghum bicolor]
20 Hb_027136_030 0.0710445132 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_000099_110 Hb_000099_110 Hb_012545_020 Hb_012545_020 Hb_000099_110--Hb_012545_020 Hb_000277_040 Hb_000277_040 Hb_000099_110--Hb_000277_040 Hb_010812_080 Hb_010812_080 Hb_000099_110--Hb_010812_080 Hb_000087_110 Hb_000087_110 Hb_000099_110--Hb_000087_110 Hb_093541_010 Hb_093541_010 Hb_000099_110--Hb_093541_010 Hb_101724_010 Hb_101724_010 Hb_000099_110--Hb_101724_010 Hb_012545_020--Hb_000277_040 Hb_012545_020--Hb_010812_080 Hb_006198_160 Hb_006198_160 Hb_012545_020--Hb_006198_160 Hb_015447_010 Hb_015447_010 Hb_012545_020--Hb_015447_010 Hb_012545_020--Hb_101724_010 Hb_002186_120 Hb_002186_120 Hb_000277_040--Hb_002186_120 Hb_018671_010 Hb_018671_010 Hb_000277_040--Hb_018671_010 Hb_000053_150 Hb_000053_150 Hb_000277_040--Hb_000053_150 Hb_000277_040--Hb_010812_080 Hb_122079_010 Hb_122079_010 Hb_010812_080--Hb_122079_010 Hb_010812_080--Hb_000053_150 Hb_061335_010 Hb_061335_010 Hb_010812_080--Hb_061335_010 Hb_000087_110--Hb_093541_010 Hb_000087_110--Hb_101724_010 Hb_005081_050 Hb_005081_050 Hb_000087_110--Hb_005081_050 Hb_000087_110--Hb_006198_160 Hb_073680_010 Hb_073680_010 Hb_000087_110--Hb_073680_010 Hb_157950_010 Hb_157950_010 Hb_000087_110--Hb_157950_010 Hb_093541_010--Hb_101724_010 Hb_093541_010--Hb_006198_160 Hb_093541_010--Hb_015447_010 Hb_093541_010--Hb_005081_050 Hb_093541_010--Hb_073680_010 Hb_101724_010--Hb_006198_160 Hb_101724_010--Hb_015447_010 Hb_101724_010--Hb_005081_050 Hb_101724_010--Hb_073680_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.07305 14.0004 122.242 0 0.149117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis