Hb_000099_200

Information

Type -
Description -
Location Contig99: 227820-230605
Sequence    

Annotation

kegg
ID rcu:RCOM_1689400
description hypothetical protein
nr
ID XP_002509881.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SUT9
description Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1
trembl
ID B9RCJ7
description Reticulon-like protein OS=Ricinus communis GN=RCOM_1689400 PE=4 SV=1
Gene Ontology
ID GO:0005789
description reticulon-like protein b2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64749: 227865-230312
cDNA
(Sanger)
(ID:Location)		 009_E04.ab1: 228888-230312 , 017_D12.ab1: 227916-228895 , 037_A04.ab1: 228861-230312 , 037_D08.ab1: 228880-230312

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001811_020 0.0633364121 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000029_020 0.0908025014 - - Vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_000186_240 0.0942780703 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
5 Hb_010638_020 0.1024522018 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
6 Hb_006693_030 0.1070122779 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
7 Hb_000115_330 0.1073275723 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
8 Hb_131864_040 0.1102574344 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
9 Hb_002835_410 0.1105258962 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
10 Hb_000200_050 0.1147696111 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002357_040 0.11553472 - - latex-abundant protein [Hevea brasiliensis]
12 Hb_006935_050 0.1167812063 - - PREDICTED: probable glutathione peroxidase 2 [Populus euphratica]
13 Hb_007575_040 0.1168286182 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1-like [Jatropha curcas]
14 Hb_001677_110 0.1169830538 - - Protein YIPF1, putative [Ricinus communis]
15 Hb_001158_140 0.117848356 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
16 Hb_012340_010 0.118389481 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
17 Hb_183086_060 0.1195255447 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
18 Hb_002603_160 0.1208067234 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
19 Hb_001258_080 0.1212722068 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
20 Hb_000205_270 0.1214444364 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000099_200 Hb_000099_200 Hb_001811_020 Hb_001811_020 Hb_000099_200--Hb_001811_020 Hb_000029_020 Hb_000029_020 Hb_000099_200--Hb_000029_020 Hb_000186_240 Hb_000186_240 Hb_000099_200--Hb_000186_240 Hb_010638_020 Hb_010638_020 Hb_000099_200--Hb_010638_020 Hb_006693_030 Hb_006693_030 Hb_000099_200--Hb_006693_030 Hb_000115_330 Hb_000115_330 Hb_000099_200--Hb_000115_330 Hb_001811_020--Hb_000029_020 Hb_000205_270 Hb_000205_270 Hb_001811_020--Hb_000205_270 Hb_001811_020--Hb_000115_330 Hb_001258_080 Hb_001258_080 Hb_001811_020--Hb_001258_080 Hb_183086_060 Hb_183086_060 Hb_001811_020--Hb_183086_060 Hb_000029_020--Hb_183086_060 Hb_000602_010 Hb_000602_010 Hb_000029_020--Hb_000602_010 Hb_002687_110 Hb_002687_110 Hb_000029_020--Hb_002687_110 Hb_000029_020--Hb_000115_330 Hb_004109_190 Hb_004109_190 Hb_000029_020--Hb_004109_190 Hb_000200_340 Hb_000200_340 Hb_000186_240--Hb_000200_340 Hb_000592_050 Hb_000592_050 Hb_000186_240--Hb_000592_050 Hb_000179_210 Hb_000179_210 Hb_000186_240--Hb_000179_210 Hb_000186_240--Hb_010638_020 Hb_000110_160 Hb_000110_160 Hb_000186_240--Hb_000110_160 Hb_010863_080 Hb_010863_080 Hb_000186_240--Hb_010863_080 Hb_007575_040 Hb_007575_040 Hb_010638_020--Hb_007575_040 Hb_182026_020 Hb_182026_020 Hb_010638_020--Hb_182026_020 Hb_001439_120 Hb_001439_120 Hb_010638_020--Hb_001439_120 Hb_011224_080 Hb_011224_080 Hb_010638_020--Hb_011224_080 Hb_000556_080 Hb_000556_080 Hb_010638_020--Hb_000556_080 Hb_000956_010 Hb_000956_010 Hb_006693_030--Hb_000956_010 Hb_002368_050 Hb_002368_050 Hb_006693_030--Hb_002368_050 Hb_004899_320 Hb_004899_320 Hb_006693_030--Hb_004899_320 Hb_006693_030--Hb_011224_080 Hb_000029_030 Hb_000029_030 Hb_006693_030--Hb_000029_030 Hb_004662_030 Hb_004662_030 Hb_006693_030--Hb_004662_030 Hb_009486_130 Hb_009486_130 Hb_000115_330--Hb_009486_130 Hb_002477_070 Hb_002477_070 Hb_000115_330--Hb_002477_070 Hb_000115_330--Hb_000205_270 Hb_016065_010 Hb_016065_010 Hb_000115_330--Hb_016065_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
283.77 64.3242 72.8937 130.215 557.535 632.783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
467.183 547.583 892.959 252.445 109.778

CAGE analysis