Hb_000099_240

Information

Type -
Description -
Location Contig99: 312263-316091
Sequence    

Annotation

kegg
ID rcu:RCOM_0790710
description 60S ribosomal protein L7a, putative
nr
ID XP_002525937.1
description 60S ribosomal protein L7a, putative [Ricinus communis]
swissprot
ID P35685
description 60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1
trembl
ID B9SIW8
description 60S ribosomal protein L7a, putative OS=Ricinus communis GN=RCOM_0790710 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l7a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64755: 312374-315785 , PASA_asmbl_64756: 312546-312752
cDNA
(Sanger)
(ID:Location)		 003_C15.ab1: 312374-315440 , 008_A04.ab1: 312371-315077 , 025_J09.ab1: 312374-315430 , 027_A12.ab1: 312376-315365 , 046_D16.ab1: 312376-315423

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_240 0.0 - - 60S ribosomal protein L7a, putative [Ricinus communis]
2 Hb_007590_010 0.0637990191 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000923_020 0.0647684153 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
4 Hb_004223_090 0.0697747523 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
5 Hb_001358_030 0.0711095233 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
6 Hb_003777_270 0.0747907431 - - 60S ribosomal protein L3B [Hevea brasiliensis]
7 Hb_001677_210 0.077978801 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
8 Hb_000057_040 0.0781513097 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_168707_030 0.080048045 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
10 Hb_003642_060 0.0803713688 - - hypothetical protein RCOM_1189860 [Ricinus communis]
11 Hb_003058_130 0.0830974411 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
12 Hb_004195_160 0.0839949026 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
13 Hb_001301_160 0.0843286211 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
14 Hb_000349_060 0.0852626125 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
15 Hb_001377_290 0.0858930651 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
16 Hb_003615_010 0.0868778989 - - 60S ribosomal protein L8, putative [Ricinus communis]
17 Hb_002375_020 0.0870029056 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
18 Hb_003392_040 0.0870883842 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
19 Hb_012193_010 0.0874193747 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_143813_010 0.0876049959 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_000099_240 Hb_000099_240 Hb_007590_010 Hb_007590_010 Hb_000099_240--Hb_007590_010 Hb_000923_020 Hb_000923_020 Hb_000099_240--Hb_000923_020 Hb_004223_090 Hb_004223_090 Hb_000099_240--Hb_004223_090 Hb_001358_030 Hb_001358_030 Hb_000099_240--Hb_001358_030 Hb_003777_270 Hb_003777_270 Hb_000099_240--Hb_003777_270 Hb_001677_210 Hb_001677_210 Hb_000099_240--Hb_001677_210 Hb_007590_010--Hb_001358_030 Hb_005333_070 Hb_005333_070 Hb_007590_010--Hb_005333_070 Hb_001226_160 Hb_001226_160 Hb_007590_010--Hb_001226_160 Hb_007590_010--Hb_000923_020 Hb_168000_010 Hb_168000_010 Hb_007590_010--Hb_168000_010 Hb_003777_330 Hb_003777_330 Hb_000923_020--Hb_003777_330 Hb_000923_020--Hb_004223_090 Hb_002375_020 Hb_002375_020 Hb_000923_020--Hb_002375_020 Hb_001377_290 Hb_001377_290 Hb_000923_020--Hb_001377_290 Hb_000621_080 Hb_000621_080 Hb_000923_020--Hb_000621_080 Hb_004223_090--Hb_003777_270 Hb_000057_200 Hb_000057_200 Hb_004223_090--Hb_000057_200 Hb_039946_020 Hb_039946_020 Hb_004223_090--Hb_039946_020 Hb_003159_080 Hb_003159_080 Hb_004223_090--Hb_003159_080 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_012008_020 Hb_012008_020 Hb_001358_030--Hb_012008_020 Hb_105386_010 Hb_105386_010 Hb_001358_030--Hb_105386_010 Hb_096563_010 Hb_096563_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_000189_340 Hb_000189_340 Hb_001358_030--Hb_000189_340 Hb_033642_010 Hb_033642_010 Hb_003777_270--Hb_033642_010 Hb_009111_050 Hb_009111_050 Hb_003777_270--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_003777_270--Hb_000032_570 Hb_133271_020 Hb_133271_020 Hb_003777_270--Hb_133271_020 Hb_000808_270 Hb_000808_270 Hb_001677_210--Hb_000808_270 Hb_003766_040 Hb_003766_040 Hb_001677_210--Hb_003766_040 Hb_000629_010 Hb_000629_010 Hb_001677_210--Hb_000629_010 Hb_006185_050 Hb_006185_050 Hb_001677_210--Hb_006185_050 Hb_008803_090 Hb_008803_090 Hb_001677_210--Hb_008803_090 Hb_000926_280 Hb_000926_280 Hb_001677_210--Hb_000926_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
334.123 172.164 135.53 131.901 330.986 499.274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
275.957 392.23 261.354 194.082 45.0803

CAGE analysis