Hb_000100_100

Information

Type -
Description -
Location Contig100: 287329-288331
Sequence    

Annotation

kegg
ID brp:103868904
description probable acyl-activating enzyme 16, chloroplastic
nr
ID CAN77914.1
description hypothetical protein VITISV_027675 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AGI4
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027675 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable acyl-activating enzyme chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000100_100 0.0 - - hypothetical protein VITISV_027675 [Vitis vinifera]
2 Hb_000264_170 0.1013438065 - - PREDICTED: uncharacterized protein LOC105649522 [Jatropha curcas]
3 Hb_000699_140 0.1055470387 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
4 Hb_001100_050 0.1148620192 - - PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Malus domestica]
5 Hb_000020_190 0.116812045 - - hypothetical protein RCOM_0452240 [Ricinus communis]
6 Hb_000723_130 0.1203577079 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
7 Hb_000166_110 0.1204360347 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
8 Hb_005539_220 0.1237482739 - - spermidine synthase 1, putative [Ricinus communis]
9 Hb_062135_030 0.1240491052 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
10 Hb_002054_040 0.1261211432 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
11 Hb_006921_030 0.1271523909 - - PREDICTED: uncharacterized protein LOC105638271 [Jatropha curcas]
12 Hb_001322_190 0.1278187966 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
13 Hb_001124_160 0.1279030496 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
14 Hb_001677_060 0.1317015282 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
15 Hb_002026_180 0.1331287374 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
16 Hb_006922_100 0.133942714 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
17 Hb_002024_010 0.134237598 - - hypothetical protein B456_003G0564002, partial [Gossypium raimondii]
18 Hb_019654_190 0.1346673669 - - protein kinase, putative [Ricinus communis]
19 Hb_000445_420 0.1352880496 - - protein transporter, putative [Ricinus communis]
20 Hb_011318_010 0.1357540969 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000100_100 Hb_000100_100 Hb_000264_170 Hb_000264_170 Hb_000100_100--Hb_000264_170 Hb_000699_140 Hb_000699_140 Hb_000100_100--Hb_000699_140 Hb_001100_050 Hb_001100_050 Hb_000100_100--Hb_001100_050 Hb_000020_190 Hb_000020_190 Hb_000100_100--Hb_000020_190 Hb_000723_130 Hb_000723_130 Hb_000100_100--Hb_000723_130 Hb_000166_110 Hb_000166_110 Hb_000100_100--Hb_000166_110 Hb_007044_140 Hb_007044_140 Hb_000264_170--Hb_007044_140 Hb_000032_100 Hb_000032_100 Hb_000264_170--Hb_000032_100 Hb_000445_420 Hb_000445_420 Hb_000264_170--Hb_000445_420 Hb_000580_190 Hb_000580_190 Hb_000264_170--Hb_000580_190 Hb_007441_120 Hb_007441_120 Hb_000264_170--Hb_007441_120 Hb_002016_110 Hb_002016_110 Hb_000264_170--Hb_002016_110 Hb_000699_140--Hb_001100_050 Hb_000620_010 Hb_000620_010 Hb_000699_140--Hb_000620_010 Hb_007477_080 Hb_007477_080 Hb_000699_140--Hb_007477_080 Hb_001862_190 Hb_001862_190 Hb_000699_140--Hb_001862_190 Hb_000699_140--Hb_000020_190 Hb_000512_060 Hb_000512_060 Hb_000699_140--Hb_000512_060 Hb_001100_050--Hb_007477_080 Hb_001100_050--Hb_000620_010 Hb_003641_050 Hb_003641_050 Hb_001100_050--Hb_003641_050 Hb_006816_390 Hb_006816_390 Hb_001100_050--Hb_006816_390 Hb_000072_220 Hb_000072_220 Hb_001100_050--Hb_000072_220 Hb_006922_100 Hb_006922_100 Hb_000020_190--Hb_006922_100 Hb_001124_160 Hb_001124_160 Hb_000020_190--Hb_001124_160 Hb_007075_040 Hb_007075_040 Hb_000020_190--Hb_007075_040 Hb_005539_220 Hb_005539_220 Hb_000020_190--Hb_005539_220 Hb_000630_050 Hb_000630_050 Hb_000020_190--Hb_000630_050 Hb_000915_020 Hb_000915_020 Hb_000020_190--Hb_000915_020 Hb_002311_040 Hb_002311_040 Hb_000723_130--Hb_002311_040 Hb_006915_030 Hb_006915_030 Hb_000723_130--Hb_006915_030 Hb_000571_110 Hb_000571_110 Hb_000723_130--Hb_000571_110 Hb_009548_020 Hb_009548_020 Hb_000723_130--Hb_009548_020 Hb_002942_100 Hb_002942_100 Hb_000723_130--Hb_002942_100 Hb_000832_020 Hb_000832_020 Hb_000723_130--Hb_000832_020 Hb_000889_020 Hb_000889_020 Hb_000166_110--Hb_000889_020 Hb_002054_040 Hb_002054_040 Hb_000166_110--Hb_002054_040 Hb_005839_060 Hb_005839_060 Hb_000166_110--Hb_005839_060 Hb_004370_030 Hb_004370_030 Hb_000166_110--Hb_004370_030 Hb_000166_110--Hb_001124_160 Hb_000076_120 Hb_000076_120 Hb_000166_110--Hb_000076_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.997 4.46538 5.04168 3.90407 3.59636 14.4534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1582 4.78335 12.8068 5.79342 5.90105

CAGE analysis