Hb_000100_180

Information

Type -
Description -
Location Contig100: 394222-399798
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa001870mg
description hypothetical protein
nr
ID XP_012078456.1
description PREDICTED: probable acyl-activating enzyme 16, chloroplastic [Jatropha curcas]
swissprot
ID Q9LK39
description Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana GN=AAE16 PE=2 SV=1
trembl
ID A0A067KLB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13144 PE=4 SV=1
Gene Ontology
ID GO:0016874
description probable acyl-activating enzyme chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00207: 376377-399749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000100_180 0.0 - - PREDICTED: probable acyl-activating enzyme 16, chloroplastic [Jatropha curcas]
2 Hb_000544_090 0.0877143486 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
3 Hb_023480_010 0.1054547492 - - cellular nucleic acid binding protein, putative [Ricinus communis]
4 Hb_002022_060 0.1107436142 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
5 Hb_001049_090 0.1134602752 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
6 Hb_000100_160 0.116197382 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
7 Hb_007441_130 0.1173682658 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000109_210 0.1188240996 - - PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
9 Hb_021409_180 0.1202976698 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
10 Hb_001124_160 0.1204963866 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
11 Hb_001021_220 0.1211562285 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
12 Hb_000044_040 0.1218531631 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
13 Hb_008120_030 0.1221787561 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
14 Hb_001789_190 0.1235770416 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
15 Hb_011344_160 0.1247784823 - - PREDICTED: primary amine oxidase [Jatropha curcas]
16 Hb_000740_050 0.1250589044 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
17 Hb_006373_010 0.1251508573 - - Potassium transporter 11 [Gossypium arboreum]
18 Hb_000020_190 0.1259926408 - - hypothetical protein RCOM_0452240 [Ricinus communis]
19 Hb_004097_070 0.1260566911 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
20 Hb_000983_150 0.1263468222 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000100_180 Hb_000100_180 Hb_000544_090 Hb_000544_090 Hb_000100_180--Hb_000544_090 Hb_023480_010 Hb_023480_010 Hb_000100_180--Hb_023480_010 Hb_002022_060 Hb_002022_060 Hb_000100_180--Hb_002022_060 Hb_001049_090 Hb_001049_090 Hb_000100_180--Hb_001049_090 Hb_000100_160 Hb_000100_160 Hb_000100_180--Hb_000100_160 Hb_007441_130 Hb_007441_130 Hb_000100_180--Hb_007441_130 Hb_000544_090--Hb_023480_010 Hb_005993_050 Hb_005993_050 Hb_000544_090--Hb_005993_050 Hb_003609_030 Hb_003609_030 Hb_000544_090--Hb_003609_030 Hb_008406_200 Hb_008406_200 Hb_000544_090--Hb_008406_200 Hb_000915_020 Hb_000915_020 Hb_000544_090--Hb_000915_020 Hb_000457_260 Hb_000457_260 Hb_000544_090--Hb_000457_260 Hb_003680_150 Hb_003680_150 Hb_023480_010--Hb_003680_150 Hb_000983_150 Hb_000983_150 Hb_023480_010--Hb_000983_150 Hb_002684_040 Hb_002684_040 Hb_023480_010--Hb_002684_040 Hb_003025_110 Hb_003025_110 Hb_023480_010--Hb_003025_110 Hb_000853_230 Hb_000853_230 Hb_023480_010--Hb_000853_230 Hb_001377_320 Hb_001377_320 Hb_002022_060--Hb_001377_320 Hb_007904_120 Hb_007904_120 Hb_002022_060--Hb_007904_120 Hb_007007_060 Hb_007007_060 Hb_002022_060--Hb_007007_060 Hb_003794_010 Hb_003794_010 Hb_002022_060--Hb_003794_010 Hb_000009_090 Hb_000009_090 Hb_002022_060--Hb_000009_090 Hb_162286_010 Hb_162286_010 Hb_002022_060--Hb_162286_010 Hb_000202_040 Hb_000202_040 Hb_001049_090--Hb_000202_040 Hb_001227_060 Hb_001227_060 Hb_001049_090--Hb_001227_060 Hb_000363_240 Hb_000363_240 Hb_001049_090--Hb_000363_240 Hb_011129_040 Hb_011129_040 Hb_001049_090--Hb_011129_040 Hb_000050_190 Hb_000050_190 Hb_001049_090--Hb_000050_190 Hb_004545_090 Hb_004545_090 Hb_000100_160--Hb_004545_090 Hb_002493_020 Hb_002493_020 Hb_000100_160--Hb_002493_020 Hb_000007_450 Hb_000007_450 Hb_000100_160--Hb_000007_450 Hb_001329_140 Hb_001329_140 Hb_000100_160--Hb_001329_140 Hb_004224_020 Hb_004224_020 Hb_000100_160--Hb_004224_020 Hb_000044_040 Hb_000044_040 Hb_007441_130--Hb_000044_040 Hb_000008_290 Hb_000008_290 Hb_007441_130--Hb_000008_290 Hb_007441_130--Hb_023480_010 Hb_004097_070 Hb_004097_070 Hb_007441_130--Hb_004097_070 Hb_007062_020 Hb_007062_020 Hb_007441_130--Hb_007062_020 Hb_006909_070 Hb_006909_070 Hb_007441_130--Hb_006909_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8499 14.1798 16.8184 13.1916 8.49808 27.2319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.591 7.38542 13.7809 14.6467 18.5127

CAGE analysis