Hb_000101_050

Information

Type -
Description -
Location Contig101: 83403-84194
Sequence    

Annotation

kegg
ID rcu:RCOM_0852690
description Metalloendoproteinase 1 precursor, putative (EC:3.4.24.7)
nr
ID XP_002517411.1
description Metalloendoproteinase 1 precursor, putative [Ricinus communis]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID B9RUG6
description Metalloendoproteinase 1, putative OS=Ricinus communis GN=RCOM_0852690 PE=4 SV=1
Gene Ontology
ID GO:0031012
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 006_E01.ab1: 83467-84229

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_050 0.0 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
2 Hb_006446_060 0.0513226736 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
3 Hb_041769_010 0.060645012 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
4 Hb_001902_180 0.085974658 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
5 Hb_005993_070 0.0870225769 - - lipid binding protein, putative [Ricinus communis]
6 Hb_005731_080 0.0901802637 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
7 Hb_059162_010 0.0977791304 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_002311_050 0.0991917693 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
9 Hb_011628_030 0.100189839 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001621_140 0.1009013928 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
11 Hb_002553_120 0.1058526496 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
12 Hb_161393_010 0.1060972839 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_000411_060 0.1065707056 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
14 Hb_047163_010 0.1083899687 - - PREDICTED: periaxin-like [Populus euphratica]
15 Hb_000813_120 0.1105857175 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
16 Hb_002234_150 0.1111908935 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
17 Hb_183700_010 0.1130413927 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_012019_020 0.1131814237 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
19 Hb_005653_020 0.1149862113 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
20 Hb_000118_010 0.1186886687 desease resistance Gene Name: LRR_4 hypothetical protein POPTR_0021s00470g [Populus trichocarpa]

Gene co-expression network

sample Hb_000101_050 Hb_000101_050 Hb_006446_060 Hb_006446_060 Hb_000101_050--Hb_006446_060 Hb_041769_010 Hb_041769_010 Hb_000101_050--Hb_041769_010 Hb_001902_180 Hb_001902_180 Hb_000101_050--Hb_001902_180 Hb_005993_070 Hb_005993_070 Hb_000101_050--Hb_005993_070 Hb_005731_080 Hb_005731_080 Hb_000101_050--Hb_005731_080 Hb_059162_010 Hb_059162_010 Hb_000101_050--Hb_059162_010 Hb_006446_060--Hb_041769_010 Hb_001621_140 Hb_001621_140 Hb_006446_060--Hb_001621_140 Hb_006446_060--Hb_005993_070 Hb_161393_010 Hb_161393_010 Hb_006446_060--Hb_161393_010 Hb_005653_020 Hb_005653_020 Hb_006446_060--Hb_005653_020 Hb_041769_010--Hb_161393_010 Hb_041769_010--Hb_059162_010 Hb_041769_010--Hb_001621_140 Hb_004185_040 Hb_004185_040 Hb_041769_010--Hb_004185_040 Hb_001902_180--Hb_005993_070 Hb_001902_180--Hb_006446_060 Hb_009012_020 Hb_009012_020 Hb_001902_180--Hb_009012_020 Hb_001902_180--Hb_005731_080 Hb_000411_060 Hb_000411_060 Hb_001902_180--Hb_000411_060 Hb_005993_070--Hb_005731_080 Hb_002743_030 Hb_002743_030 Hb_005993_070--Hb_002743_030 Hb_125876_010 Hb_125876_010 Hb_005993_070--Hb_125876_010 Hb_005731_080--Hb_002743_030 Hb_012019_030 Hb_012019_030 Hb_005731_080--Hb_012019_030 Hb_006478_190 Hb_006478_190 Hb_005731_080--Hb_006478_190 Hb_004195_040 Hb_004195_040 Hb_005731_080--Hb_004195_040 Hb_000365_300 Hb_000365_300 Hb_005731_080--Hb_000365_300 Hb_047163_010 Hb_047163_010 Hb_059162_010--Hb_047163_010 Hb_011628_030 Hb_011628_030 Hb_059162_010--Hb_011628_030 Hb_059162_010--Hb_004185_040 Hb_059162_010--Hb_002743_030 Hb_059162_010--Hb_004195_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 19.4409 2.06006 1.61806 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 53.3695 1.07842

CAGE analysis