Hb_000101_080

Information

Type -
Description -
Location Contig101: 121409-126023
Sequence    

Annotation

kegg
ID rcu:RCOM_0852680
description Protein CREG1 precursor, putative
nr
ID XP_012082344.1
description PREDICTED: protein CREG1 [Jatropha curcas]
swissprot
ID O75629
description Protein CREG1 OS=Homo sapiens GN=CREG1 PE=1 SV=1
trembl
ID A0A067LDU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09667 PE=4 SV=1
Gene Ontology
ID GO:0005773
description protein creg1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00566: 121591-125806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_080 0.0 - - PREDICTED: protein CREG1 [Jatropha curcas]
2 Hb_001512_040 0.0594410173 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
3 Hb_000260_460 0.069905719 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
4 Hb_032202_220 0.0754742736 - - ring finger protein, putative [Ricinus communis]
5 Hb_000703_190 0.0775902953 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
6 Hb_079526_040 0.0787919855 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
7 Hb_000078_140 0.079683301 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
8 Hb_001703_050 0.0815074604 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
9 Hb_011214_160 0.0830663483 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
10 Hb_019181_040 0.0838012386 - - component of oligomeric golgi complex, putative [Ricinus communis]
11 Hb_002473_050 0.0879201626 - - catalytic, putative [Ricinus communis]
12 Hb_000853_440 0.0880311732 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
13 Hb_000903_010 0.0884782624 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
14 Hb_000787_060 0.0903389112 - - thioredoxin domain-containing protein, putative [Ricinus communis]
15 Hb_000046_500 0.0921014449 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
16 Hb_159809_070 0.0923521519 - - phospholipase A-2-activating protein, putative [Ricinus communis]
17 Hb_074197_040 0.0930750828 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
18 Hb_000006_010 0.0937093951 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000317_040 0.0940109436 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
20 Hb_003777_200 0.0940411024 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]

Gene co-expression network

sample Hb_000101_080 Hb_000101_080 Hb_001512_040 Hb_001512_040 Hb_000101_080--Hb_001512_040 Hb_000260_460 Hb_000260_460 Hb_000101_080--Hb_000260_460 Hb_032202_220 Hb_032202_220 Hb_000101_080--Hb_032202_220 Hb_000703_190 Hb_000703_190 Hb_000101_080--Hb_000703_190 Hb_079526_040 Hb_079526_040 Hb_000101_080--Hb_079526_040 Hb_000078_140 Hb_000078_140 Hb_000101_080--Hb_000078_140 Hb_001512_040--Hb_032202_220 Hb_019181_040 Hb_019181_040 Hb_001512_040--Hb_019181_040 Hb_004754_050 Hb_004754_050 Hb_001512_040--Hb_004754_050 Hb_002326_040 Hb_002326_040 Hb_001512_040--Hb_002326_040 Hb_000836_290 Hb_000836_290 Hb_001512_040--Hb_000836_290 Hb_000260_460--Hb_000703_190 Hb_000028_520 Hb_000028_520 Hb_000260_460--Hb_000028_520 Hb_000260_460--Hb_000078_140 Hb_000317_040 Hb_000317_040 Hb_000260_460--Hb_000317_040 Hb_001703_040 Hb_001703_040 Hb_000260_460--Hb_001703_040 Hb_001301_270 Hb_001301_270 Hb_032202_220--Hb_001301_270 Hb_032202_220--Hb_000078_140 Hb_001876_040 Hb_001876_040 Hb_032202_220--Hb_001876_040 Hb_002774_190 Hb_002774_190 Hb_032202_220--Hb_002774_190 Hb_001157_230 Hb_001157_230 Hb_032202_220--Hb_001157_230 Hb_000061_180 Hb_000061_180 Hb_032202_220--Hb_000061_180 Hb_000703_190--Hb_000078_140 Hb_001817_170 Hb_001817_170 Hb_000703_190--Hb_001817_170 Hb_000139_080 Hb_000139_080 Hb_000703_190--Hb_000139_080 Hb_000703_190--Hb_000317_040 Hb_159809_070 Hb_159809_070 Hb_000703_190--Hb_159809_070 Hb_001518_080 Hb_001518_080 Hb_079526_040--Hb_001518_080 Hb_079526_040--Hb_000078_140 Hb_003581_200 Hb_003581_200 Hb_079526_040--Hb_003581_200 Hb_079526_040--Hb_159809_070 Hb_000046_500 Hb_000046_500 Hb_079526_040--Hb_000046_500 Hb_005650_010 Hb_005650_010 Hb_079526_040--Hb_005650_010 Hb_000078_140--Hb_000139_080 Hb_074197_040 Hb_074197_040 Hb_000078_140--Hb_074197_040 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.05899 6.93216 17.6059 20.7143 14.0486 7.85213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.54234 8.73607 10.9133 11.7952 16.596

CAGE analysis