Hb_000101_090

Information

Type -
Description -
Location Contig101: 139220-147669
Sequence    

Annotation

kegg
ID eus:EUTSA_v10005082mg
description hypothetical protein
nr
ID XP_010518613.1
description PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
swissprot
ID Q9SJ89
description Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Arabidopsis thaliana GN=FTRC PE=2 SV=1
trembl
ID V4KYY5
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005082mg PE=4 SV=1
Gene Ontology
ID GO:0009570
description ferredoxin-thioredoxin reductase catalytic chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_090 0.0 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
2 Hb_002272_260 0.0984569678 - - -
3 Hb_009543_030 0.1105563936 - - prefoldin subunit 1 [Jatropha curcas]
4 Hb_004453_150 0.1110126076 - - BnaC02g13240D [Brassica napus]
5 Hb_002301_280 0.1128780216 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
6 Hb_000442_160 0.1168126054 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
7 Hb_004143_110 0.1179645939 - - PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
8 Hb_011174_010 0.1186888639 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
9 Hb_004117_180 0.1189527323 - - -
10 Hb_011016_090 0.1262061795 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
11 Hb_009558_020 0.1271957859 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
12 Hb_015057_010 0.1273817266 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
13 Hb_004724_100 0.1289275778 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
14 Hb_002197_030 0.1319111862 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]
15 Hb_073367_010 0.1320586551 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
16 Hb_034585_030 0.1334954158 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
17 Hb_000175_070 0.1349741532 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
18 Hb_002107_160 0.1361622493 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
19 Hb_000671_100 0.1372401857 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
20 Hb_006252_010 0.1373927523 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000101_090 Hb_000101_090 Hb_002272_260 Hb_002272_260 Hb_000101_090--Hb_002272_260 Hb_009543_030 Hb_009543_030 Hb_000101_090--Hb_009543_030 Hb_004453_150 Hb_004453_150 Hb_000101_090--Hb_004453_150 Hb_002301_280 Hb_002301_280 Hb_000101_090--Hb_002301_280 Hb_000442_160 Hb_000442_160 Hb_000101_090--Hb_000442_160 Hb_004143_110 Hb_004143_110 Hb_000101_090--Hb_004143_110 Hb_000771_100 Hb_000771_100 Hb_002272_260--Hb_000771_100 Hb_002272_260--Hb_004453_150 Hb_000676_290 Hb_000676_290 Hb_002272_260--Hb_000676_290 Hb_002272_260--Hb_002301_280 Hb_002259_150 Hb_002259_150 Hb_002272_260--Hb_002259_150 Hb_011174_010 Hb_011174_010 Hb_002272_260--Hb_011174_010 Hb_000103_140 Hb_000103_140 Hb_009543_030--Hb_000103_140 Hb_000175_070 Hb_000175_070 Hb_009543_030--Hb_000175_070 Hb_000510_090 Hb_000510_090 Hb_009543_030--Hb_000510_090 Hb_007193_100 Hb_007193_100 Hb_009543_030--Hb_007193_100 Hb_009543_030--Hb_004453_150 Hb_000684_230 Hb_000684_230 Hb_009543_030--Hb_000684_230 Hb_015057_010 Hb_015057_010 Hb_004453_150--Hb_015057_010 Hb_011161_040 Hb_011161_040 Hb_004453_150--Hb_011161_040 Hb_025193_050 Hb_025193_050 Hb_004453_150--Hb_025193_050 Hb_004453_150--Hb_007193_100 Hb_004453_150--Hb_000175_070 Hb_005389_150 Hb_005389_150 Hb_002301_280--Hb_005389_150 Hb_137403_010 Hb_137403_010 Hb_002301_280--Hb_137403_010 Hb_002107_160 Hb_002107_160 Hb_002301_280--Hb_002107_160 Hb_007101_100 Hb_007101_100 Hb_002301_280--Hb_007101_100 Hb_001009_040 Hb_001009_040 Hb_002301_280--Hb_001009_040 Hb_006447_010 Hb_006447_010 Hb_000442_160--Hb_006447_010 Hb_000365_360 Hb_000365_360 Hb_000442_160--Hb_000365_360 Hb_000749_150 Hb_000749_150 Hb_000442_160--Hb_000749_150 Hb_133271_020 Hb_133271_020 Hb_000442_160--Hb_133271_020 Hb_001246_100 Hb_001246_100 Hb_000442_160--Hb_001246_100 Hb_010608_010 Hb_010608_010 Hb_000442_160--Hb_010608_010 Hb_004143_110--Hb_004453_150 Hb_004143_110--Hb_002272_260 Hb_004143_110--Hb_015057_010 Hb_006788_070 Hb_006788_070 Hb_004143_110--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_004143_110--Hb_009558_020 Hb_004374_200 Hb_004374_200 Hb_004143_110--Hb_004374_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.837 1.26404 4.50295 4.81006 9.15099 29.573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3325 11.0878 6.55338 4.69805 1.12913

CAGE analysis