Hb_000101_160

Information

Type -
Description -
Location Contig101: 203406-204345
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19830g
description POPTRDRAFT_770228; hypothetical protein
nr
ID XP_011035979.1
description PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HSQ7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00572: 203736-204195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_160 0.0 - - PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]
2 Hb_001678_020 0.1325491166 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
3 Hb_001506_010 0.1820740125 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
4 Hb_000857_050 0.201257605 - - PREDICTED: protein YLS9 [Jatropha curcas]
5 Hb_007603_010 0.2118800596 - - conserved hypothetical protein [Ricinus communis]
6 Hb_138600_010 0.2126459848 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
7 Hb_002233_090 0.2132925146 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
8 Hb_000827_080 0.2161473148 - - catalytic, putative [Ricinus communis]
9 Hb_000832_200 0.2200008429 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
10 Hb_010317_020 0.2241584482 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
11 Hb_010620_010 0.2265287 - - hypothetical protein JCGZ_22570 [Jatropha curcas]
12 Hb_000431_020 0.2268243801 - - hypothetical protein JCGZ_06801 [Jatropha curcas]
13 Hb_000163_280 0.2277832986 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
14 Hb_109168_010 0.2294993707 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
15 Hb_029510_010 0.231351834 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
16 Hb_024404_010 0.2333305396 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
17 Hb_000926_120 0.2339767502 - - PREDICTED: aspartic proteinase A1-like [Jatropha curcas]
18 Hb_000103_360 0.2365796933 - - -
19 Hb_090497_010 0.2387314943 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
20 Hb_000038_030 0.2388970376 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]

Gene co-expression network

sample Hb_000101_160 Hb_000101_160 Hb_001678_020 Hb_001678_020 Hb_000101_160--Hb_001678_020 Hb_001506_010 Hb_001506_010 Hb_000101_160--Hb_001506_010 Hb_000857_050 Hb_000857_050 Hb_000101_160--Hb_000857_050 Hb_007603_010 Hb_007603_010 Hb_000101_160--Hb_007603_010 Hb_138600_010 Hb_138600_010 Hb_000101_160--Hb_138600_010 Hb_002233_090 Hb_002233_090 Hb_000101_160--Hb_002233_090 Hb_010620_010 Hb_010620_010 Hb_001678_020--Hb_010620_010 Hb_000103_360 Hb_000103_360 Hb_001678_020--Hb_000103_360 Hb_023323_010 Hb_023323_010 Hb_001678_020--Hb_023323_010 Hb_001678_020--Hb_002233_090 Hb_000384_040 Hb_000384_040 Hb_001678_020--Hb_000384_040 Hb_010317_020 Hb_010317_020 Hb_001506_010--Hb_010317_020 Hb_001506_010--Hb_001678_020 Hb_000038_030 Hb_000038_030 Hb_001506_010--Hb_000038_030 Hb_024404_010 Hb_024404_010 Hb_001506_010--Hb_024404_010 Hb_024505_050 Hb_024505_050 Hb_001506_010--Hb_024505_050 Hb_000832_200 Hb_000832_200 Hb_000857_050--Hb_000832_200 Hb_000099_220 Hb_000099_220 Hb_000857_050--Hb_000099_220 Hb_003768_040 Hb_003768_040 Hb_000857_050--Hb_003768_040 Hb_001329_260 Hb_001329_260 Hb_000857_050--Hb_001329_260 Hb_000431_020 Hb_000431_020 Hb_000857_050--Hb_000431_020 Hb_007904_080 Hb_007904_080 Hb_007603_010--Hb_007904_080 Hb_000041_020 Hb_000041_020 Hb_007603_010--Hb_000041_020 Hb_109168_010 Hb_109168_010 Hb_007603_010--Hb_109168_010 Hb_000850_050 Hb_000850_050 Hb_007603_010--Hb_000850_050 Hb_001484_120 Hb_001484_120 Hb_007603_010--Hb_001484_120 Hb_000099_210 Hb_000099_210 Hb_007603_010--Hb_000099_210 Hb_029510_010 Hb_029510_010 Hb_138600_010--Hb_029510_010 Hb_000163_280 Hb_000163_280 Hb_138600_010--Hb_000163_280 Hb_002232_290 Hb_002232_290 Hb_138600_010--Hb_002232_290 Hb_088542_010 Hb_088542_010 Hb_138600_010--Hb_088542_010 Hb_004102_130 Hb_004102_130 Hb_138600_010--Hb_004102_130 Hb_000250_080 Hb_000250_080 Hb_138600_010--Hb_000250_080 Hb_002233_090--Hb_109168_010 Hb_001959_050 Hb_001959_050 Hb_002233_090--Hb_001959_050 Hb_000395_140 Hb_000395_140 Hb_002233_090--Hb_000395_140 Hb_001040_170 Hb_001040_170 Hb_002233_090--Hb_001040_170 Hb_006091_030 Hb_006091_030 Hb_002233_090--Hb_006091_030 Hb_000926_120 Hb_000926_120 Hb_002233_090--Hb_000926_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.37704 2.13016 1.42891 3.04845 22.8193 17.2975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.061564 0.0968239 10.8372 7.46829 1.46741

CAGE analysis