Hb_000101_170

Information

Type -
Description -
Location Contig101: 213812-215334
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00573: 214554-214874 , PASA_asmbl_00574: 214554-214874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_170 0.0 - - -
2 Hb_000318_380 0.1014303123 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
3 Hb_000617_020 0.106300672 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
4 Hb_000152_430 0.1112604939 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
5 Hb_003125_040 0.1115569264 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
6 Hb_060809_010 0.1218443091 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
7 Hb_000317_430 0.1286253284 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
8 Hb_000928_240 0.1311523666 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
9 Hb_028486_040 0.1323124519 - - 40S ribosomal protein S14, putative [Ricinus communis]
10 Hb_000608_420 0.1331165314 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
11 Hb_000189_620 0.1340600348 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
12 Hb_004662_030 0.1342417466 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
13 Hb_002107_130 0.1348098665 - - protein with unknown function [Ricinus communis]
14 Hb_031527_050 0.134884737 - - PREDICTED: universal stress protein A-like protein [Populus euphratica]
15 Hb_001329_220 0.1358424297 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005348_080 0.1371140958 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
17 Hb_003086_110 0.1374684203 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
18 Hb_000035_380 0.1375997586 - - -
19 Hb_007747_090 0.1381196157 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
20 Hb_000175_070 0.1399273089 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000101_170 Hb_000101_170 Hb_000318_380 Hb_000318_380 Hb_000101_170--Hb_000318_380 Hb_000617_020 Hb_000617_020 Hb_000101_170--Hb_000617_020 Hb_000152_430 Hb_000152_430 Hb_000101_170--Hb_000152_430 Hb_003125_040 Hb_003125_040 Hb_000101_170--Hb_003125_040 Hb_060809_010 Hb_060809_010 Hb_000101_170--Hb_060809_010 Hb_000317_430 Hb_000317_430 Hb_000101_170--Hb_000317_430 Hb_000318_380--Hb_000152_430 Hb_001824_070 Hb_001824_070 Hb_000318_380--Hb_001824_070 Hb_007747_090 Hb_007747_090 Hb_000318_380--Hb_007747_090 Hb_000928_240 Hb_000928_240 Hb_000318_380--Hb_000928_240 Hb_001477_110 Hb_001477_110 Hb_000318_380--Hb_001477_110 Hb_011139_020 Hb_011139_020 Hb_000318_380--Hb_011139_020 Hb_000174_090 Hb_000174_090 Hb_000617_020--Hb_000174_090 Hb_007426_230 Hb_007426_230 Hb_000617_020--Hb_007426_230 Hb_002835_410 Hb_002835_410 Hb_000617_020--Hb_002835_410 Hb_001771_090 Hb_001771_090 Hb_000617_020--Hb_001771_090 Hb_002609_110 Hb_002609_110 Hb_000617_020--Hb_002609_110 Hb_000175_070 Hb_000175_070 Hb_000617_020--Hb_000175_070 Hb_000152_430--Hb_011139_020 Hb_001019_090 Hb_001019_090 Hb_000152_430--Hb_001019_090 Hb_025193_050 Hb_025193_050 Hb_000152_430--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_000152_430--Hb_024650_050 Hb_000152_430--Hb_000928_240 Hb_002942_020 Hb_002942_020 Hb_003125_040--Hb_002942_020 Hb_003125_040--Hb_060809_010 Hb_006569_020 Hb_006569_020 Hb_003125_040--Hb_006569_020 Hb_003125_040--Hb_000928_240 Hb_003125_040--Hb_000317_430 Hb_118419_020 Hb_118419_020 Hb_003125_040--Hb_118419_020 Hb_060809_010--Hb_000317_430 Hb_000035_380 Hb_000035_380 Hb_060809_010--Hb_000035_380 Hb_003728_020 Hb_003728_020 Hb_060809_010--Hb_003728_020 Hb_060809_010--Hb_000175_070 Hb_003005_020 Hb_003005_020 Hb_060809_010--Hb_003005_020 Hb_000317_430--Hb_000035_380 Hb_000317_430--Hb_000175_070 Hb_000317_430--Hb_118419_020 Hb_000365_360 Hb_000365_360 Hb_000317_430--Hb_000365_360 Hb_007193_100 Hb_007193_100 Hb_000317_430--Hb_007193_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4977 3.54127 1.58456 7.25242 37.0657 30.819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.2337 33.2501 19.5354 14.8484 1.58061

CAGE analysis