Hb_000101_180

Information

Type -
Description -
Location Contig101: 216796-218484
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_180 0.0 - - -
2 Hb_000313_320 0.2041695204 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
3 Hb_017111_010 0.2247956314 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
4 Hb_000186_100 0.2301142155 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
5 Hb_085892_020 0.2309818381 - - -
6 Hb_123104_010 0.2388137609 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
7 Hb_000605_010 0.2453793951 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
8 Hb_003687_200 0.2504023983 - - PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]
9 Hb_005797_050 0.2562037327 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
10 Hb_032264_130 0.2573588048 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
11 Hb_000959_360 0.2613327635 - - transporter, putative [Ricinus communis]
12 Hb_002388_060 0.2672873892 - - conserved hypothetical protein [Ricinus communis]
13 Hb_095471_010 0.2720300081 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
14 Hb_002094_020 0.2731593654 - - PREDICTED: alpha-copaene synthase-like [Jatropha curcas]
15 Hb_007545_210 0.2741889677 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
16 Hb_128496_010 0.2761061959 - - unnamed protein product [Vitis vinifera]
17 Hb_001138_010 0.277904698 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_001916_130 0.2889226941 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
19 Hb_000879_050 0.2914827433 - - PREDICTED: uncharacterized protein LOC105107600 [Populus euphratica]
20 Hb_000028_630 0.2917417259 - - PIN-like protein, partial [Selaginella apoda]

Gene co-expression network

sample Hb_000101_180 Hb_000101_180 Hb_000313_320 Hb_000313_320 Hb_000101_180--Hb_000313_320 Hb_017111_010 Hb_017111_010 Hb_000101_180--Hb_017111_010 Hb_000186_100 Hb_000186_100 Hb_000101_180--Hb_000186_100 Hb_085892_020 Hb_085892_020 Hb_000101_180--Hb_085892_020 Hb_123104_010 Hb_123104_010 Hb_000101_180--Hb_123104_010 Hb_000605_010 Hb_000605_010 Hb_000101_180--Hb_000605_010 Hb_095471_010 Hb_095471_010 Hb_000313_320--Hb_095471_010 Hb_000313_320--Hb_000186_100 Hb_000258_150 Hb_000258_150 Hb_000313_320--Hb_000258_150 Hb_000313_320--Hb_123104_010 Hb_002388_060 Hb_002388_060 Hb_000313_320--Hb_002388_060 Hb_017111_010--Hb_000186_100 Hb_000523_020 Hb_000523_020 Hb_017111_010--Hb_000523_020 Hb_017111_010--Hb_002388_060 Hb_003687_200 Hb_003687_200 Hb_017111_010--Hb_003687_200 Hb_007545_210 Hb_007545_210 Hb_017111_010--Hb_007545_210 Hb_126669_010 Hb_126669_010 Hb_017111_010--Hb_126669_010 Hb_000186_100--Hb_002388_060 Hb_000186_100--Hb_007545_210 Hb_040506_010 Hb_040506_010 Hb_000186_100--Hb_040506_010 Hb_000186_100--Hb_003687_200 Hb_032264_130 Hb_032264_130 Hb_000186_100--Hb_032264_130 Hb_000548_030 Hb_000548_030 Hb_085892_020--Hb_000548_030 Hb_085892_020--Hb_000258_150 Hb_000959_360 Hb_000959_360 Hb_085892_020--Hb_000959_360 Hb_003304_050 Hb_003304_050 Hb_085892_020--Hb_003304_050 Hb_100414_010 Hb_100414_010 Hb_085892_020--Hb_100414_010 Hb_123104_010--Hb_000186_100 Hb_002307_050 Hb_002307_050 Hb_123104_010--Hb_002307_050 Hb_123104_010--Hb_017111_010 Hb_002007_290 Hb_002007_290 Hb_123104_010--Hb_002007_290 Hb_001138_010 Hb_001138_010 Hb_000605_010--Hb_001138_010 Hb_073212_010 Hb_073212_010 Hb_000605_010--Hb_073212_010 Hb_002234_220 Hb_002234_220 Hb_000605_010--Hb_002234_220 Hb_001677_050 Hb_001677_050 Hb_000605_010--Hb_001677_050 Hb_000879_050 Hb_000879_050 Hb_000605_010--Hb_000879_050 Hb_088542_010 Hb_088542_010 Hb_000605_010--Hb_088542_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47815 0 0.0240921 0.198976 0.275981 0.318113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.073589 0.0578576 0.104007 0 0

CAGE analysis