Hb_000101_270

Information

Type -
Description -
Location Contig101: 292444-292887
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06660g
description POPTRDRAFT_765552; pleckstrin homology domain-containing family protein
nr
ID XP_002312150.2
description pleckstrin homology domain-containing family protein [Populus trichocarpa]
swissprot
ID Q9ST43
description Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2
trembl
ID B9HHM5
description Pleckstrin homology domain-containing family protein OS=Populus trichocarpa GN=POPTR_0008s06660g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00588: 292296-292971
cDNA
(Sanger)
(ID:Location)		 047_P10.ab1: 292297-292971

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_270 0.0 - - pleckstrin homology domain-containing family protein [Populus trichocarpa]
2 Hb_003939_080 0.0813605447 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001946_210 0.0872781359 - - ribosomal protein l7ae, putative [Ricinus communis]
4 Hb_002868_010 0.0883234788 - - 60S ribosomal protein L30, putative [Ricinus communis]
5 Hb_064264_010 0.0894352228 - - hypothetical protein [Zea mays]
6 Hb_070986_010 0.0930388328 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
7 Hb_000000_160 0.0931644993 - - PREDICTED: membrin-11 [Jatropha curcas]
8 Hb_046049_010 0.0960953395 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
9 Hb_000163_160 0.1001224968 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
10 Hb_001143_130 0.1007959052 - - peroxidase 2 [Hevea brasiliensis]
11 Hb_023226_040 0.1019157313 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
12 Hb_003994_180 0.1047638364 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
13 Hb_181288_010 0.1058019384 - - rac-GTP binding protein, putative [Ricinus communis]
14 Hb_002105_090 0.1065977004 - - Rab4 [Hevea brasiliensis]
15 Hb_002518_050 0.1082329074 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
16 Hb_002495_070 0.1087035653 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
17 Hb_001178_100 0.1088566443 - - 60S acidic ribosomal protein P2-4 [Theobroma cacao]
18 Hb_005489_130 0.1089757131 - - calmodulin, putative [Ricinus communis]
19 Hb_003874_020 0.1105098104 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
20 Hb_000084_290 0.1106955227 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000101_270 Hb_000101_270 Hb_003939_080 Hb_003939_080 Hb_000101_270--Hb_003939_080 Hb_001946_210 Hb_001946_210 Hb_000101_270--Hb_001946_210 Hb_002868_010 Hb_002868_010 Hb_000101_270--Hb_002868_010 Hb_064264_010 Hb_064264_010 Hb_000101_270--Hb_064264_010 Hb_070986_010 Hb_070986_010 Hb_000101_270--Hb_070986_010 Hb_000000_160 Hb_000000_160 Hb_000101_270--Hb_000000_160 Hb_003939_080--Hb_002868_010 Hb_001512_070 Hb_001512_070 Hb_003939_080--Hb_001512_070 Hb_003939_080--Hb_001946_210 Hb_011360_140 Hb_011360_140 Hb_003939_080--Hb_011360_140 Hb_002007_060 Hb_002007_060 Hb_003939_080--Hb_002007_060 Hb_001828_090 Hb_001828_090 Hb_003939_080--Hb_001828_090 Hb_001946_210--Hb_002868_010 Hb_046049_010 Hb_046049_010 Hb_001946_210--Hb_046049_010 Hb_000380_190 Hb_000380_190 Hb_001946_210--Hb_000380_190 Hb_002311_350 Hb_002311_350 Hb_001946_210--Hb_002311_350 Hb_002868_010--Hb_002007_060 Hb_002868_010--Hb_000000_160 Hb_002868_010--Hb_011360_140 Hb_002868_010--Hb_001512_070 Hb_064264_010--Hb_046049_010 Hb_042083_050 Hb_042083_050 Hb_064264_010--Hb_042083_050 Hb_064264_010--Hb_002868_010 Hb_064264_010--Hb_001946_210 Hb_175215_010 Hb_175215_010 Hb_064264_010--Hb_175215_010 Hb_004204_120 Hb_004204_120 Hb_070986_010--Hb_004204_120 Hb_001584_070 Hb_001584_070 Hb_070986_010--Hb_001584_070 Hb_002105_090 Hb_002105_090 Hb_070986_010--Hb_002105_090 Hb_000798_030 Hb_000798_030 Hb_070986_010--Hb_000798_030 Hb_010883_150 Hb_010883_150 Hb_070986_010--Hb_010883_150 Hb_001257_080 Hb_001257_080 Hb_070986_010--Hb_001257_080 Hb_000000_160--Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_000000_160--Hb_023226_040 Hb_000661_250 Hb_000661_250 Hb_000000_160--Hb_000661_250 Hb_000000_160--Hb_011360_140 Hb_000494_020 Hb_000494_020 Hb_000000_160--Hb_000494_020 Hb_010407_040 Hb_010407_040 Hb_000000_160--Hb_010407_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
108.942 55.0635 35.9622 53.0248 77.9171 95.7648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
125.578 168.097 41.9272 35.7898 8.43536

CAGE analysis