Hb_000101_300

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig101: 300669-312188
Sequence    

Annotation

kegg
ID pxb:103954671
description disease resistance protein At4g27190-like
nr
ID KJB12957.1
description hypothetical protein B456_002G046500, partial [Gossypium raimondii]
swissprot
ID O23317
description Probable disease resistance protein At4g14610 OS=Arabidopsis thaliana GN=At4g14610 PE=3 SV=1
trembl
ID A0A0D2M6T3
description Gossypium raimondii chromosome 2, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_002G046500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_300 0.0 desease resistance Gene Name: NB-ARC hypothetical protein B456_002G046500, partial [Gossypium raimondii]
2 Hb_004604_030 0.1260738855 - - unnamed protein product [Coffea canephora]
3 Hb_007472_020 0.1616727569 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
4 Hb_004032_330 0.1906115484 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
5 Hb_000770_010 0.1923630046 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
6 Hb_021409_120 0.1964151696 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_005016_100 0.21692941 - - -
8 Hb_061908_020 0.2242563578 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_000703_180 0.2243458555 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
10 Hb_001251_070 0.2269346085 - - PREDICTED: probable aldo-keto reductase 2, partial [Populus euphratica]
11 Hb_006040_070 0.2276159227 - - orf107b gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
12 Hb_002874_170 0.2294662807 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
13 Hb_172676_010 0.2310121627 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
14 Hb_002006_060 0.2328506671 - - PREDICTED: oleosin 1-like [Jatropha curcas]
15 Hb_029576_010 0.2343887019 - - PREDICTED: B-cell receptor-associated protein 31-like [Glycine max]
16 Hb_001391_100 0.2386267892 - - AMP dependent ligase, putative [Ricinus communis]
17 Hb_011287_060 0.2400859469 - - -
18 Hb_001141_060 0.2509925603 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
19 Hb_001141_190 0.2511888572 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000566_190 0.2514022405 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000101_300 Hb_000101_300 Hb_004604_030 Hb_004604_030 Hb_000101_300--Hb_004604_030 Hb_007472_020 Hb_007472_020 Hb_000101_300--Hb_007472_020 Hb_004032_330 Hb_004032_330 Hb_000101_300--Hb_004032_330 Hb_000770_010 Hb_000770_010 Hb_000101_300--Hb_000770_010 Hb_021409_120 Hb_021409_120 Hb_000101_300--Hb_021409_120 Hb_005016_100 Hb_005016_100 Hb_000101_300--Hb_005016_100 Hb_004604_030--Hb_004032_330 Hb_004604_030--Hb_005016_100 Hb_004604_030--Hb_007472_020 Hb_004604_030--Hb_021409_120 Hb_004604_030--Hb_000770_010 Hb_007472_020--Hb_004032_330 Hb_007472_020--Hb_000770_010 Hb_000703_180 Hb_000703_180 Hb_007472_020--Hb_000703_180 Hb_007472_020--Hb_021409_120 Hb_004032_330--Hb_005016_100 Hb_004032_330--Hb_000770_010 Hb_004032_330--Hb_021409_120 Hb_027337_030 Hb_027337_030 Hb_004032_330--Hb_027337_030 Hb_003077_140 Hb_003077_140 Hb_004032_330--Hb_003077_140 Hb_000770_010--Hb_005016_100 Hb_000770_010--Hb_021409_120 Hb_006483_090 Hb_006483_090 Hb_000770_010--Hb_006483_090 Hb_004864_020 Hb_004864_020 Hb_000770_010--Hb_004864_020 Hb_000679_260 Hb_000679_260 Hb_000770_010--Hb_000679_260 Hb_021409_120--Hb_006483_090 Hb_000270_250 Hb_000270_250 Hb_021409_120--Hb_000270_250 Hb_000500_230 Hb_000500_230 Hb_021409_120--Hb_000500_230 Hb_000007_440 Hb_000007_440 Hb_021409_120--Hb_000007_440 Hb_002010_070 Hb_002010_070 Hb_005016_100--Hb_002010_070 Hb_000614_190 Hb_000614_190 Hb_005016_100--Hb_000614_190 Hb_001357_360 Hb_001357_360 Hb_005016_100--Hb_001357_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.411528 0.182524 0.123156 0 0.18288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0119255 0.137123 0.226274

CAGE analysis