Hb_000101_330

Information

Type -
Description -
Location Contig101: 317191-317815
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_330 0.0 - - -
2 Hb_007477_060 0.0375553122 - - unknown [Medicago truncatula]
3 Hb_006570_030 0.0502749539 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
4 Hb_005063_030 0.0536932017 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
5 Hb_001028_040 0.0597598058 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
6 Hb_001699_140 0.0602339561 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
7 Hb_002368_060 0.0631654201 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003536_020 0.0639932196 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
9 Hb_000077_380 0.064268421 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
10 Hb_002871_180 0.0651028012 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
11 Hb_001975_100 0.0673851345 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
12 Hb_001416_130 0.0685898728 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000545_180 0.0688342475 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
14 Hb_000139_310 0.0692226082 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
15 Hb_001322_120 0.0700635472 - - nutrient reservoir, putative [Ricinus communis]
16 Hb_001564_120 0.070779638 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
17 Hb_000589_340 0.0751164616 - - unknown [Populus trichocarpa x Populus deltoides]
18 Hb_005054_120 0.0761067143 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
19 Hb_001292_030 0.0771136865 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
20 Hb_001766_160 0.077879426 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]

Gene co-expression network

sample Hb_000101_330 Hb_000101_330 Hb_007477_060 Hb_007477_060 Hb_000101_330--Hb_007477_060 Hb_006570_030 Hb_006570_030 Hb_000101_330--Hb_006570_030 Hb_005063_030 Hb_005063_030 Hb_000101_330--Hb_005063_030 Hb_001028_040 Hb_001028_040 Hb_000101_330--Hb_001028_040 Hb_001699_140 Hb_001699_140 Hb_000101_330--Hb_001699_140 Hb_002368_060 Hb_002368_060 Hb_000101_330--Hb_002368_060 Hb_002871_180 Hb_002871_180 Hb_007477_060--Hb_002871_180 Hb_007477_060--Hb_006570_030 Hb_001766_160 Hb_001766_160 Hb_007477_060--Hb_001766_160 Hb_003536_020 Hb_003536_020 Hb_007477_060--Hb_003536_020 Hb_001322_120 Hb_001322_120 Hb_007477_060--Hb_001322_120 Hb_000139_310 Hb_000139_310 Hb_006570_030--Hb_000139_310 Hb_006570_030--Hb_002368_060 Hb_006570_030--Hb_001028_040 Hb_006570_030--Hb_001322_120 Hb_001292_030 Hb_001292_030 Hb_006570_030--Hb_001292_030 Hb_001416_130 Hb_001416_130 Hb_006570_030--Hb_001416_130 Hb_001975_100 Hb_001975_100 Hb_005063_030--Hb_001975_100 Hb_001564_120 Hb_001564_120 Hb_005063_030--Hb_001564_120 Hb_000254_130 Hb_000254_130 Hb_005063_030--Hb_000254_130 Hb_005063_030--Hb_001292_030 Hb_001999_230 Hb_001999_230 Hb_005063_030--Hb_001999_230 Hb_001028_040--Hb_002368_060 Hb_001028_040--Hb_000139_310 Hb_002785_030 Hb_002785_030 Hb_001028_040--Hb_002785_030 Hb_001028_040--Hb_001322_120 Hb_001028_040--Hb_001292_030 Hb_001699_140--Hb_007477_060 Hb_005305_070 Hb_005305_070 Hb_001699_140--Hb_005305_070 Hb_000270_090 Hb_000270_090 Hb_001699_140--Hb_000270_090 Hb_005054_120 Hb_005054_120 Hb_001699_140--Hb_005054_120 Hb_000460_040 Hb_000460_040 Hb_001699_140--Hb_000460_040 Hb_002368_060--Hb_000139_310 Hb_002368_060--Hb_002785_030 Hb_002368_060--Hb_001322_120 Hb_002368_060--Hb_001292_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.338037 2.14257 0.82798 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0487328 4.08069

CAGE analysis