Hb_000101_380

Information

Type -
Description -
Location Contig101: 345151-348294
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06670g
description POPTRDRAFT_1084600; hypothetical protein
nr
ID XP_011016323.1
description PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
swissprot
ID O04209
description Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1
trembl
ID A0A067L8L7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01286 PE=4 SV=1
Gene Ontology
ID GO:0030130
description clathrin light chain 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00595: 342453-344241 , PASA_asmbl_00596: 345148-348082 , PASA_asmbl_00597: 345840-348022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_380 0.0 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
2 Hb_000007_280 0.053717091 - - hypothetical protein VITISV_000066 [Vitis vinifera]
3 Hb_000776_100 0.0633414266 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
4 Hb_000915_080 0.067135195 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
5 Hb_001005_030 0.0678713522 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
6 Hb_017700_010 0.0711771422 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
7 Hb_000737_030 0.0733050571 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
8 Hb_002398_030 0.0733217158 - - amino acid binding protein, putative [Ricinus communis]
9 Hb_003549_090 0.0738949666 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
10 Hb_001051_080 0.0746058193 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
11 Hb_000309_040 0.074770634 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
12 Hb_002311_070 0.07538863 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
13 Hb_058999_030 0.0755191593 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
14 Hb_000933_010 0.0756299231 - - -
15 Hb_001418_040 0.0759836431 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
16 Hb_005588_090 0.0761545551 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
17 Hb_005460_050 0.0770072537 - - COR413-PM2, putative [Ricinus communis]
18 Hb_002783_170 0.0770452837 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
19 Hb_002836_140 0.0772669941 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
20 Hb_001635_160 0.0779614091 - - hypothetical protein JCGZ_24810 [Jatropha curcas]

Gene co-expression network

sample Hb_000101_380 Hb_000101_380 Hb_000007_280 Hb_000007_280 Hb_000101_380--Hb_000007_280 Hb_000776_100 Hb_000776_100 Hb_000101_380--Hb_000776_100 Hb_000915_080 Hb_000915_080 Hb_000101_380--Hb_000915_080 Hb_001005_030 Hb_001005_030 Hb_000101_380--Hb_001005_030 Hb_017700_010 Hb_017700_010 Hb_000101_380--Hb_017700_010 Hb_000737_030 Hb_000737_030 Hb_000101_380--Hb_000737_030 Hb_003549_090 Hb_003549_090 Hb_000007_280--Hb_003549_090 Hb_000007_280--Hb_000915_080 Hb_000007_280--Hb_001005_030 Hb_011310_130 Hb_011310_130 Hb_000007_280--Hb_011310_130 Hb_010272_010 Hb_010272_010 Hb_000007_280--Hb_010272_010 Hb_000414_050 Hb_000414_050 Hb_000776_100--Hb_000414_050 Hb_003038_120 Hb_003038_120 Hb_000776_100--Hb_003038_120 Hb_000138_130 Hb_000138_130 Hb_000776_100--Hb_000138_130 Hb_006588_070 Hb_006588_070 Hb_000776_100--Hb_006588_070 Hb_002783_170 Hb_002783_170 Hb_000776_100--Hb_002783_170 Hb_002836_140 Hb_002836_140 Hb_000915_080--Hb_002836_140 Hb_002042_030 Hb_002042_030 Hb_000915_080--Hb_002042_030 Hb_000915_080--Hb_002783_170 Hb_000915_080--Hb_000414_050 Hb_000362_170 Hb_000362_170 Hb_001005_030--Hb_000362_170 Hb_000373_080 Hb_000373_080 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_058999_030 Hb_058999_030 Hb_017700_010--Hb_058999_030 Hb_001047_220 Hb_001047_220 Hb_017700_010--Hb_001047_220 Hb_003964_070 Hb_003964_070 Hb_017700_010--Hb_003964_070 Hb_000313_260 Hb_000313_260 Hb_017700_010--Hb_000313_260 Hb_003018_130 Hb_003018_130 Hb_017700_010--Hb_003018_130 Hb_032990_010 Hb_032990_010 Hb_000737_030--Hb_032990_010 Hb_001002_060 Hb_001002_060 Hb_000737_030--Hb_001002_060 Hb_000737_030--Hb_001005_030 Hb_004586_060 Hb_004586_060 Hb_000737_030--Hb_004586_060 Hb_000737_030--Hb_000373_080 Hb_001377_310 Hb_001377_310 Hb_000737_030--Hb_001377_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.322 36.7646 49.8361 53.6154 62.7187 58.9005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.4356 35.2437 24.0393 35.9818 35.3477

CAGE analysis