Hb_000102_020

Information

Type -
Description -
Location Contig102: 21905-36440
Sequence    

Annotation

kegg
ID tcc:TCM_011079
description Uracil dna glycosylase isoform 1
nr
ID KDP34462.1
description hypothetical protein JCGZ_11933 [Jatropha curcas]
swissprot
ID Q88N05
description Uracil-DNA glycosylase OS=Pseudomonas putida (strain KT2440) GN=ung PE=3 SV=1
trembl
ID A0A067KEB6
description Uracil-DNA glycosylase OS=Jatropha curcas GN=JCGZ_11933 PE=3 SV=1
Gene Ontology
ID GO:0005634
description uracil-dna glycosylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00952: 22044-36219 , PASA_asmbl_00954: 29132-29566 , PASA_asmbl_00955: 29972-30200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000102_020 0.0 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
2 Hb_007441_040 0.0428598747 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
3 Hb_009051_030 0.0679169761 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
4 Hb_000261_140 0.0700578215 - - -
5 Hb_000656_170 0.0751049713 - - lsm1, putative [Ricinus communis]
6 Hb_009182_010 0.0759156346 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
7 Hb_001214_160 0.0768700007 - - 60S ribosomal protein L27B [Hevea brasiliensis]
8 Hb_000638_250 0.0772097681 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_007012_060 0.0772648318 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
10 Hb_101705_030 0.077491093 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
11 Hb_006541_010 0.0775781102 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
12 Hb_001616_040 0.0788986297 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
13 Hb_000792_130 0.082675791 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
14 Hb_010175_040 0.0838812602 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
15 Hb_010042_010 0.0847455925 - - Urease accessory protein ureD, putative [Ricinus communis]
16 Hb_001057_040 0.0853822968 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
17 Hb_001842_040 0.0865894999 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
18 Hb_000152_420 0.0866724547 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
19 Hb_006816_530 0.0868538013 - - 60S ribosomal protein L18, putative [Ricinus communis]
20 Hb_002830_020 0.0868849856 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000102_020 Hb_000102_020 Hb_007441_040 Hb_007441_040 Hb_000102_020--Hb_007441_040 Hb_009051_030 Hb_009051_030 Hb_000102_020--Hb_009051_030 Hb_000261_140 Hb_000261_140 Hb_000102_020--Hb_000261_140 Hb_000656_170 Hb_000656_170 Hb_000102_020--Hb_000656_170 Hb_009182_010 Hb_009182_010 Hb_000102_020--Hb_009182_010 Hb_001214_160 Hb_001214_160 Hb_000102_020--Hb_001214_160 Hb_007441_040--Hb_009182_010 Hb_006541_010 Hb_006541_010 Hb_007441_040--Hb_006541_010 Hb_001814_050 Hb_001814_050 Hb_007441_040--Hb_001814_050 Hb_007012_060 Hb_007012_060 Hb_007441_040--Hb_007012_060 Hb_007441_040--Hb_000656_170 Hb_003787_010 Hb_003787_010 Hb_009051_030--Hb_003787_010 Hb_001057_040 Hb_001057_040 Hb_009051_030--Hb_001057_040 Hb_005784_110 Hb_005784_110 Hb_009051_030--Hb_005784_110 Hb_009051_030--Hb_000656_170 Hb_000574_480 Hb_000574_480 Hb_009051_030--Hb_000574_480 Hb_010175_040 Hb_010175_040 Hb_000261_140--Hb_010175_040 Hb_001123_130 Hb_001123_130 Hb_000261_140--Hb_001123_130 Hb_000920_110 Hb_000920_110 Hb_000261_140--Hb_000920_110 Hb_001484_070 Hb_001484_070 Hb_000261_140--Hb_001484_070 Hb_000638_250 Hb_000638_250 Hb_000261_140--Hb_000638_250 Hb_004143_150 Hb_004143_150 Hb_000261_140--Hb_004143_150 Hb_004032_010 Hb_004032_010 Hb_000656_170--Hb_004032_010 Hb_003108_020 Hb_003108_020 Hb_000656_170--Hb_003108_020 Hb_000479_190 Hb_000479_190 Hb_000656_170--Hb_000479_190 Hb_143766_010 Hb_143766_010 Hb_009182_010--Hb_143766_010 Hb_000982_090 Hb_000982_090 Hb_009182_010--Hb_000982_090 Hb_091433_020 Hb_091433_020 Hb_009182_010--Hb_091433_020 Hb_004157_030 Hb_004157_030 Hb_009182_010--Hb_004157_030 Hb_003226_210 Hb_003226_210 Hb_001214_160--Hb_003226_210 Hb_006816_530 Hb_006816_530 Hb_001214_160--Hb_006816_530 Hb_000363_480 Hb_000363_480 Hb_001214_160--Hb_000363_480 Hb_011628_040 Hb_011628_040 Hb_001214_160--Hb_011628_040 Hb_004125_110 Hb_004125_110 Hb_001214_160--Hb_004125_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0532 8.41756 15.0338 20.013 11.5178 23.9414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.5977 44.9492 28.9632 15.0227 7.52618

CAGE analysis