Hb_000103_030

Information

Type -
Description -
Location Contig103: 18717-19061
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAN66555.1
description hypothetical protein VITISV_021700 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5CAQ2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_030 0.0 - - hypothetical protein VITISV_021700 [Vitis vinifera]
2 Hb_105602_020 0.1237344351 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
3 Hb_001143_070 0.130175638 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
4 Hb_004461_020 0.1314376575 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
5 Hb_002989_040 0.1331428932 - - hypothetical protein 1 [Hevea brasiliensis]
6 Hb_089100_050 0.1353917787 - - -
7 Hb_001425_070 0.1480982145 - - -
8 Hb_001425_060 0.1485898119 - - conserved hypothetical protein [Ricinus communis]
9 Hb_091433_030 0.1625334746 - - -
10 Hb_023051_020 0.1654508277 - - -
11 Hb_001348_230 0.1656796388 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
12 Hb_000450_020 0.1722637321 - - conserved hypothetical protein [Ricinus communis]
13 Hb_034482_040 0.1730531824 - - aspartate kinase, partial [Francisella tularensis]
14 Hb_001425_050 0.1753031715 - - -
15 Hb_001369_210 0.1893194428 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
16 Hb_003226_240 0.1910668286 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
17 Hb_003913_050 0.1962606244 - - 60S ribosomal protein L27B [Hevea brasiliensis]
18 Hb_141194_010 0.197102635 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
19 Hb_007426_050 0.1999664439 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
20 Hb_004064_020 0.2007605184 - - hypothetical protein M569_06853, partial [Genlisea aurea]

Gene co-expression network

sample Hb_000103_030 Hb_000103_030 Hb_105602_020 Hb_105602_020 Hb_000103_030--Hb_105602_020 Hb_001143_070 Hb_001143_070 Hb_000103_030--Hb_001143_070 Hb_004461_020 Hb_004461_020 Hb_000103_030--Hb_004461_020 Hb_002989_040 Hb_002989_040 Hb_000103_030--Hb_002989_040 Hb_089100_050 Hb_089100_050 Hb_000103_030--Hb_089100_050 Hb_001425_070 Hb_001425_070 Hb_000103_030--Hb_001425_070 Hb_105602_020--Hb_002989_040 Hb_105602_020--Hb_089100_050 Hb_004064_020 Hb_004064_020 Hb_105602_020--Hb_004064_020 Hb_003913_050 Hb_003913_050 Hb_105602_020--Hb_003913_050 Hb_000920_320 Hb_000920_320 Hb_105602_020--Hb_000920_320 Hb_001143_070--Hb_002989_040 Hb_001348_230 Hb_001348_230 Hb_001143_070--Hb_001348_230 Hb_002290_050 Hb_002290_050 Hb_001143_070--Hb_002290_050 Hb_004942_020 Hb_004942_020 Hb_001143_070--Hb_004942_020 Hb_000352_160 Hb_000352_160 Hb_001143_070--Hb_000352_160 Hb_004461_020--Hb_001425_070 Hb_004461_020--Hb_001143_070 Hb_001425_050 Hb_001425_050 Hb_004461_020--Hb_001425_050 Hb_001425_060 Hb_001425_060 Hb_004461_020--Hb_001425_060 Hb_004461_020--Hb_002290_050 Hb_023051_020 Hb_023051_020 Hb_002989_040--Hb_023051_020 Hb_003226_240 Hb_003226_240 Hb_002989_040--Hb_003226_240 Hb_034482_040 Hb_034482_040 Hb_002989_040--Hb_034482_040 Hb_002989_040--Hb_000920_320 Hb_004942_010 Hb_004942_010 Hb_089100_050--Hb_004942_010 Hb_089100_050--Hb_001348_230 Hb_089100_050--Hb_001143_070 Hb_089100_050--Hb_002989_040 Hb_001425_070--Hb_001425_060 Hb_091433_030 Hb_091433_030 Hb_001425_070--Hb_091433_030 Hb_001425_070--Hb_001143_070 Hb_001425_070--Hb_034482_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07881 2.75582 1.60869 0.188961 0

CAGE analysis