Hb_000103_080

Information

Type -
Description -
Location Contig103: 62543-73934
Sequence    

Annotation

kegg
ID tcc:TCM_020670
description ATP-dependent RNA and DNA helicase, putative isoform 1
nr
ID XP_012069677.1
description PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
swissprot
ID Q9SMX1
description ATP-dependent RNA helicase SUV3, mitochondrial OS=Arabidopsis thaliana GN=SUV3 PE=1 SV=1
trembl
ID A0A067L6X0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02208 PE=4 SV=1
Gene Ontology
ID GO:0005739
description atp-dependent rna helicase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01176: 62914-64447 , PASA_asmbl_01177: 68154-69441 , PASA_asmbl_01178: 73623-73977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_080 0.0 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
2 Hb_008406_190 0.0697352338 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
3 Hb_003333_060 0.077438293 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
4 Hb_033594_120 0.0848532439 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
5 Hb_000272_020 0.0859372687 - - oxidoreductase, putative [Ricinus communis]
6 Hb_010423_040 0.0892092374 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
7 Hb_000960_060 0.0900961668 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
8 Hb_001579_270 0.0905518324 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
9 Hb_000120_790 0.0937525084 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
10 Hb_020581_010 0.0990492472 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001828_190 0.0995788609 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
12 Hb_002890_140 0.099727636 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
13 Hb_002739_050 0.1000695347 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
14 Hb_007672_060 0.1006399874 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
15 Hb_009658_020 0.1010919438 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
16 Hb_000003_080 0.1013673117 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
17 Hb_012008_020 0.1013689584 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
18 Hb_028227_020 0.1016466481 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
19 Hb_000054_090 0.1026918068 - - zinc finger protein, putative [Ricinus communis]
20 Hb_114343_010 0.1034594491 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_080 Hb_000103_080 Hb_008406_190 Hb_008406_190 Hb_000103_080--Hb_008406_190 Hb_003333_060 Hb_003333_060 Hb_000103_080--Hb_003333_060 Hb_033594_120 Hb_033594_120 Hb_000103_080--Hb_033594_120 Hb_000272_020 Hb_000272_020 Hb_000103_080--Hb_000272_020 Hb_010423_040 Hb_010423_040 Hb_000103_080--Hb_010423_040 Hb_000960_060 Hb_000960_060 Hb_000103_080--Hb_000960_060 Hb_007017_030 Hb_007017_030 Hb_008406_190--Hb_007017_030 Hb_002893_080 Hb_002893_080 Hb_008406_190--Hb_002893_080 Hb_008406_190--Hb_003333_060 Hb_008406_190--Hb_010423_040 Hb_001828_190 Hb_001828_190 Hb_008406_190--Hb_001828_190 Hb_003333_060--Hb_010423_040 Hb_000373_280 Hb_000373_280 Hb_003333_060--Hb_000373_280 Hb_063090_010 Hb_063090_010 Hb_003333_060--Hb_063090_010 Hb_000486_010 Hb_000486_010 Hb_003333_060--Hb_000486_010 Hb_003633_030 Hb_003633_030 Hb_033594_120--Hb_003633_030 Hb_001252_130 Hb_001252_130 Hb_033594_120--Hb_001252_130 Hb_000421_220 Hb_000421_220 Hb_033594_120--Hb_000421_220 Hb_000054_090 Hb_000054_090 Hb_033594_120--Hb_000054_090 Hb_033594_120--Hb_000960_060 Hb_002473_130 Hb_002473_130 Hb_033594_120--Hb_002473_130 Hb_002253_100 Hb_002253_100 Hb_000272_020--Hb_002253_100 Hb_001579_270 Hb_001579_270 Hb_000272_020--Hb_001579_270 Hb_000329_140 Hb_000329_140 Hb_000272_020--Hb_000329_140 Hb_000003_080 Hb_000003_080 Hb_000272_020--Hb_000003_080 Hb_020581_010 Hb_020581_010 Hb_000272_020--Hb_020581_010 Hb_002296_040 Hb_002296_040 Hb_010423_040--Hb_002296_040 Hb_005615_080 Hb_005615_080 Hb_010423_040--Hb_005615_080 Hb_000103_090 Hb_000103_090 Hb_010423_040--Hb_000103_090 Hb_005731_050 Hb_005731_050 Hb_000960_060--Hb_005731_050 Hb_003428_030 Hb_003428_030 Hb_000960_060--Hb_003428_030 Hb_000960_060--Hb_001828_190 Hb_028227_020 Hb_028227_020 Hb_000960_060--Hb_028227_020 Hb_000093_160 Hb_000093_160 Hb_000960_060--Hb_000093_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.37457 1.6047 1.73196 2.82929 4.88075 6.01632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.83979 7.13976 2.26705 2.97648 3.57066

CAGE analysis