Hb_000103_090

Information

Type -
Description -
Location Contig103: 76071-77905
Sequence    

Annotation

kegg
ID rcu:RCOM_0911490
description hypothetical protein
nr
ID XP_012069678.1
description PREDICTED: protein RDM1 [Jatropha curcas]
swissprot
ID Q9LUJ3
description Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1
trembl
ID A0A067KVT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02210 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein rdm1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01179: 75698-75892 , PASA_asmbl_01180: 76877-77874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_090 0.0 - - PREDICTED: protein RDM1 [Jatropha curcas]
2 Hb_002890_140 0.0534117683 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
3 Hb_033834_040 0.0567727868 - - conserved hypothetical protein [Ricinus communis]
4 Hb_032717_080 0.0621175354 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
5 Hb_004128_190 0.0646367956 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
6 Hb_002477_330 0.0657558247 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
7 Hb_000529_190 0.0682865857 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
8 Hb_000815_040 0.0688772006 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
9 Hb_000116_440 0.0695425389 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
10 Hb_003599_040 0.06993392 - - unnamed protein product [Vitis vinifera]
11 Hb_001421_060 0.0706094202 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
12 Hb_159809_020 0.0729902948 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_010504_020 0.0738458823 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
14 Hb_000926_250 0.0748793306 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
15 Hb_009954_040 0.0754078787 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
16 Hb_000613_140 0.0761572482 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
17 Hb_001789_070 0.0764405341 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
18 Hb_000331_450 0.0775326273 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
19 Hb_002214_040 0.0785342221 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
20 Hb_000327_190 0.0787279033 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000103_090 Hb_000103_090 Hb_002890_140 Hb_002890_140 Hb_000103_090--Hb_002890_140 Hb_033834_040 Hb_033834_040 Hb_000103_090--Hb_033834_040 Hb_032717_080 Hb_032717_080 Hb_000103_090--Hb_032717_080 Hb_004128_190 Hb_004128_190 Hb_000103_090--Hb_004128_190 Hb_002477_330 Hb_002477_330 Hb_000103_090--Hb_002477_330 Hb_000529_190 Hb_000529_190 Hb_000103_090--Hb_000529_190 Hb_000815_040 Hb_000815_040 Hb_002890_140--Hb_000815_040 Hb_000103_560 Hb_000103_560 Hb_002890_140--Hb_000103_560 Hb_002890_140--Hb_000529_190 Hb_002890_140--Hb_033834_040 Hb_000832_140 Hb_000832_140 Hb_002890_140--Hb_000832_140 Hb_002226_070 Hb_002226_070 Hb_033834_040--Hb_002226_070 Hb_000926_250 Hb_000926_250 Hb_033834_040--Hb_000926_250 Hb_004032_010 Hb_004032_010 Hb_033834_040--Hb_004032_010 Hb_002183_090 Hb_002183_090 Hb_033834_040--Hb_002183_090 Hb_159809_020 Hb_159809_020 Hb_033834_040--Hb_159809_020 Hb_011310_190 Hb_011310_190 Hb_032717_080--Hb_011310_190 Hb_004048_070 Hb_004048_070 Hb_032717_080--Hb_004048_070 Hb_007254_040 Hb_007254_040 Hb_032717_080--Hb_007254_040 Hb_000613_140 Hb_000613_140 Hb_032717_080--Hb_000613_140 Hb_002105_090 Hb_002105_090 Hb_032717_080--Hb_002105_090 Hb_002078_150 Hb_002078_150 Hb_004128_190--Hb_002078_150 Hb_003847_080 Hb_003847_080 Hb_004128_190--Hb_003847_080 Hb_000245_130 Hb_000245_130 Hb_004128_190--Hb_000245_130 Hb_012305_050 Hb_012305_050 Hb_004128_190--Hb_012305_050 Hb_000024_080 Hb_000024_080 Hb_004128_190--Hb_000024_080 Hb_010504_020 Hb_010504_020 Hb_002477_330--Hb_010504_020 Hb_148644_010 Hb_148644_010 Hb_002477_330--Hb_148644_010 Hb_002477_330--Hb_004128_190 Hb_000045_090 Hb_000045_090 Hb_002477_330--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_002477_330--Hb_143398_010 Hb_002214_040 Hb_002214_040 Hb_000529_190--Hb_002214_040 Hb_063716_050 Hb_063716_050 Hb_000529_190--Hb_063716_050 Hb_000529_190--Hb_000103_560 Hb_001789_070 Hb_001789_070 Hb_000529_190--Hb_001789_070 Hb_001604_080 Hb_001604_080 Hb_000529_190--Hb_001604_080 Hb_000529_190--Hb_000832_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1785 6.72875 6.42925 13.6949 17.1875 25.4068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.7323 29.7214 17.8229 15.2926 9.6006

CAGE analysis