Hb_000103_110

Information

Type -
Description -
Location Contig103: 82188-86564
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15580g
description POPTRDRAFT_766377; hypothetical protein
nr
ID XP_012069682.1
description PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067KVL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02214 PE=4 SV=1
Gene Ontology
ID GO:0004715
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01182: 82333-86801 , PASA_asmbl_01183: 85477-85777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_110 0.0 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
2 Hb_000368_060 0.1285854353 - - thioredoxin H-type 6 [Hevea brasiliensis]
3 Hb_004324_050 0.1301612001 - - PREDICTED: spermine synthase [Jatropha curcas]
4 Hb_000562_040 0.1351352859 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
5 Hb_000784_030 0.1365903633 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
6 Hb_000141_030 0.1459508846 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
7 Hb_000157_040 0.1496498752 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
8 Hb_000972_010 0.150419586 - - PREDICTED: kinesin KP1 [Jatropha curcas]
9 Hb_000788_080 0.1554791679 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
10 Hb_001741_040 0.1594964805 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
11 Hb_000742_270 0.1635192197 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
12 Hb_000477_080 0.1678410921 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
13 Hb_000111_010 0.1695811721 - - DNA-directed RNA polymerase, putative [Ricinus communis]
14 Hb_000367_280 0.1736987485 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
15 Hb_011360_080 0.1762095163 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
16 Hb_002450_070 0.1777704957 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
17 Hb_005539_240 0.1781680299 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
18 Hb_000563_560 0.1797934163 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
19 Hb_000963_140 0.1798888973 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_005914_070 0.1799757111 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000103_110 Hb_000103_110 Hb_000368_060 Hb_000368_060 Hb_000103_110--Hb_000368_060 Hb_004324_050 Hb_004324_050 Hb_000103_110--Hb_004324_050 Hb_000562_040 Hb_000562_040 Hb_000103_110--Hb_000562_040 Hb_000784_030 Hb_000784_030 Hb_000103_110--Hb_000784_030 Hb_000141_030 Hb_000141_030 Hb_000103_110--Hb_000141_030 Hb_000157_040 Hb_000157_040 Hb_000103_110--Hb_000157_040 Hb_000368_060--Hb_000562_040 Hb_005539_240 Hb_005539_240 Hb_000368_060--Hb_005539_240 Hb_000368_060--Hb_000784_030 Hb_003581_260 Hb_003581_260 Hb_000368_060--Hb_003581_260 Hb_011360_080 Hb_011360_080 Hb_000368_060--Hb_011360_080 Hb_002290_040 Hb_002290_040 Hb_004324_050--Hb_002290_040 Hb_004429_070 Hb_004429_070 Hb_004324_050--Hb_004429_070 Hb_004324_050--Hb_000368_060 Hb_012423_050 Hb_012423_050 Hb_004324_050--Hb_012423_050 Hb_001762_060 Hb_001762_060 Hb_004324_050--Hb_001762_060 Hb_000562_040--Hb_000784_030 Hb_000562_040--Hb_003581_260 Hb_001135_210 Hb_001135_210 Hb_000562_040--Hb_001135_210 Hb_024714_060 Hb_024714_060 Hb_000562_040--Hb_024714_060 Hb_005614_050 Hb_005614_050 Hb_000562_040--Hb_005614_050 Hb_000784_030--Hb_001135_210 Hb_000836_130 Hb_000836_130 Hb_000784_030--Hb_000836_130 Hb_001232_140 Hb_001232_140 Hb_000784_030--Hb_001232_140 Hb_010931_050 Hb_010931_050 Hb_000784_030--Hb_010931_050 Hb_000784_030--Hb_003581_260 Hb_000963_140 Hb_000963_140 Hb_000141_030--Hb_000963_140 Hb_000141_030--Hb_010931_050 Hb_000141_030--Hb_011360_080 Hb_000141_030--Hb_004429_070 Hb_000141_030--Hb_004324_050 Hb_000141_030--Hb_000368_060 Hb_099069_010 Hb_099069_010 Hb_000157_040--Hb_099069_010 Hb_000270_410 Hb_000270_410 Hb_000157_040--Hb_000270_410 Hb_000157_040--Hb_004324_050 Hb_002685_090 Hb_002685_090 Hb_000157_040--Hb_002685_090 Hb_000563_560 Hb_000563_560 Hb_000157_040--Hb_000563_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.9974 8.03862 9.37957 21.2521 35.131 47.1867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
255.559 229.632 489.867 23.1527 15.5833

CAGE analysis