Hb_000103_120

Information

Type transcription factor
Description TF Family: CPP
Location Contig103: 92868-98549
Sequence    

Annotation

kegg
ID rcu:RCOM_0911450
description tso1, putative
nr
ID XP_012069685.1
description PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
swissprot
ID F4JIF5
description Protein tesmin/TSO1-like CXC 2 OS=Arabidopsis thaliana GN=TCX2 PE=1 SV=1
trembl
ID A0A067KVT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02215 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01184: 94337-95151 , PASA_asmbl_01185: 96284-98524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_120 0.0 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
2 Hb_002485_030 0.10053263 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
3 Hb_004324_390 0.1033514656 - - PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
4 Hb_000154_050 0.1115883979 - - CMP-sialic acid transporter, putative [Ricinus communis]
5 Hb_000331_140 0.1121475861 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
6 Hb_002783_220 0.1154117627 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
7 Hb_004032_370 0.1163748968 - - pyrophosphate-dependent phosphofructokinase [Hevea brasiliensis]
8 Hb_002284_210 0.116924362 - - PREDICTED: protein canopy-1 [Jatropha curcas]
9 Hb_044662_060 0.1202313739 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
10 Hb_001085_260 0.1210575717 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
11 Hb_006816_090 0.1220472239 - - PREDICTED: uncharacterized protein LOC105647425 isoform X2 [Jatropha curcas]
12 Hb_004013_030 0.1225834754 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
13 Hb_005064_010 0.1239777275 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
14 Hb_000071_150 0.1249089564 - - Stearoy-ACP desaturase [Ricinus communis]
15 Hb_002498_140 0.1259463546 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
16 Hb_002871_140 0.1263410757 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
17 Hb_000022_200 0.127137836 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
18 Hb_000072_090 0.1275396435 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
19 Hb_002351_030 0.1276629651 - - catalytic, putative [Ricinus communis]
20 Hb_002874_180 0.12826605 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_120 Hb_000103_120 Hb_002485_030 Hb_002485_030 Hb_000103_120--Hb_002485_030 Hb_004324_390 Hb_004324_390 Hb_000103_120--Hb_004324_390 Hb_000154_050 Hb_000154_050 Hb_000103_120--Hb_000154_050 Hb_000331_140 Hb_000331_140 Hb_000103_120--Hb_000331_140 Hb_002783_220 Hb_002783_220 Hb_000103_120--Hb_002783_220 Hb_004032_370 Hb_004032_370 Hb_000103_120--Hb_004032_370 Hb_001085_260 Hb_001085_260 Hb_002485_030--Hb_001085_260 Hb_003760_030 Hb_003760_030 Hb_002485_030--Hb_003760_030 Hb_003119_090 Hb_003119_090 Hb_002485_030--Hb_003119_090 Hb_006816_100 Hb_006816_100 Hb_002485_030--Hb_006816_100 Hb_000494_080 Hb_000494_080 Hb_002485_030--Hb_000494_080 Hb_000890_130 Hb_000890_130 Hb_004324_390--Hb_000890_130 Hb_000340_130 Hb_000340_130 Hb_004324_390--Hb_000340_130 Hb_002686_080 Hb_002686_080 Hb_004324_390--Hb_002686_080 Hb_160256_010 Hb_160256_010 Hb_004324_390--Hb_160256_010 Hb_000261_330 Hb_000261_330 Hb_004324_390--Hb_000261_330 Hb_005064_010 Hb_005064_010 Hb_000154_050--Hb_005064_010 Hb_006588_160 Hb_006588_160 Hb_000154_050--Hb_006588_160 Hb_004013_030 Hb_004013_030 Hb_000154_050--Hb_004013_030 Hb_002837_040 Hb_002837_040 Hb_000154_050--Hb_002837_040 Hb_002871_140 Hb_002871_140 Hb_000154_050--Hb_002871_140 Hb_000261_210 Hb_000261_210 Hb_000154_050--Hb_000261_210 Hb_000331_140--Hb_004013_030 Hb_000331_140--Hb_000154_050 Hb_007786_030 Hb_007786_030 Hb_000331_140--Hb_007786_030 Hb_001450_020 Hb_001450_020 Hb_000331_140--Hb_001450_020 Hb_074399_010 Hb_074399_010 Hb_000331_140--Hb_074399_010 Hb_000331_140--Hb_006588_160 Hb_006775_120 Hb_006775_120 Hb_002783_220--Hb_006775_120 Hb_000364_170 Hb_000364_170 Hb_002783_220--Hb_000364_170 Hb_000000_330 Hb_000000_330 Hb_002783_220--Hb_000000_330 Hb_005333_060 Hb_005333_060 Hb_002783_220--Hb_005333_060 Hb_019654_050 Hb_019654_050 Hb_002783_220--Hb_019654_050 Hb_000987_040 Hb_000987_040 Hb_002783_220--Hb_000987_040 Hb_004096_060 Hb_004096_060 Hb_004032_370--Hb_004096_060 Hb_000724_020 Hb_000724_020 Hb_004032_370--Hb_000724_020 Hb_002870_020 Hb_002870_020 Hb_004032_370--Hb_002870_020 Hb_003228_100 Hb_003228_100 Hb_004032_370--Hb_003228_100 Hb_002326_110 Hb_002326_110 Hb_004032_370--Hb_002326_110 Hb_077026_010 Hb_077026_010 Hb_004032_370--Hb_077026_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.18477 1.23685 9.89522 6.09769 2.86438 4.95261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.71269 1.60094 2.45277 2.77631 3.92782

CAGE analysis