Hb_000103_130

Information

Type -
Description -
Location Contig103: 98947-106966
Sequence    

Annotation

kegg
ID rcu:RCOM_0911430
description protein binding protein, putative
nr
ID XP_012069686.1
description PREDICTED: protein NETWORKED 1A [Jatropha curcas]
swissprot
ID Q9LUI2
description Protein NETWORKED 1A OS=Arabidopsis thaliana GN=NET1A PE=1 SV=1
trembl
ID A0A067KZ63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02216 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01186: 98797-99201 , PASA_asmbl_01189: 106693-107668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_130 0.0 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
2 Hb_002613_040 0.0761824555 - - phosphate translocator-related family protein [Populus trichocarpa]
3 Hb_001699_080 0.083249835 - - unnamed protein product [Coffea canephora]
4 Hb_001538_080 0.0889978792 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
5 Hb_001210_060 0.0948638386 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
6 Hb_163950_050 0.0987820007 - - protein binding protein, putative [Ricinus communis]
7 Hb_004032_190 0.0993261444 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
8 Hb_000364_090 0.1060106592 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
9 Hb_003835_080 0.1063123804 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
10 Hb_001541_200 0.1083637009 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
11 Hb_027472_060 0.1088591543 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
12 Hb_005295_020 0.1093527329 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
13 Hb_000083_210 0.1098143871 - - Major facilitator superfamily protein, putative [Theobroma cacao]
14 Hb_001512_130 0.1110793767 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
15 Hb_001289_070 0.1135686144 - - PREDICTED: protein YLS9-like [Jatropha curcas]
16 Hb_000031_180 0.1154659192 - - sarcosine oxidase, putative [Ricinus communis]
17 Hb_000417_210 0.1155439064 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_001500_130 0.1198909137 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
19 Hb_015807_130 0.1204117018 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
20 Hb_001296_060 0.1204674843 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000103_130 Hb_000103_130 Hb_002613_040 Hb_002613_040 Hb_000103_130--Hb_002613_040 Hb_001699_080 Hb_001699_080 Hb_000103_130--Hb_001699_080 Hb_001538_080 Hb_001538_080 Hb_000103_130--Hb_001538_080 Hb_001210_060 Hb_001210_060 Hb_000103_130--Hb_001210_060 Hb_163950_050 Hb_163950_050 Hb_000103_130--Hb_163950_050 Hb_004032_190 Hb_004032_190 Hb_000103_130--Hb_004032_190 Hb_002613_040--Hb_163950_050 Hb_114917_010 Hb_114917_010 Hb_002613_040--Hb_114917_010 Hb_006355_060 Hb_006355_060 Hb_002613_040--Hb_006355_060 Hb_003097_220 Hb_003097_220 Hb_002613_040--Hb_003097_220 Hb_006750_010 Hb_006750_010 Hb_002613_040--Hb_006750_010 Hb_001512_130 Hb_001512_130 Hb_001699_080--Hb_001512_130 Hb_015807_130 Hb_015807_130 Hb_001699_080--Hb_015807_130 Hb_000270_380 Hb_000270_380 Hb_001699_080--Hb_000270_380 Hb_002081_020 Hb_002081_020 Hb_001699_080--Hb_002081_020 Hb_005656_120 Hb_005656_120 Hb_001699_080--Hb_005656_120 Hb_001538_080--Hb_001210_060 Hb_097335_010 Hb_097335_010 Hb_001538_080--Hb_097335_010 Hb_027472_060 Hb_027472_060 Hb_001538_080--Hb_027472_060 Hb_005730_060 Hb_005730_060 Hb_001538_080--Hb_005730_060 Hb_000235_040 Hb_000235_040 Hb_001538_080--Hb_000235_040 Hb_000847_030 Hb_000847_030 Hb_001210_060--Hb_000847_030 Hb_003018_150 Hb_003018_150 Hb_001210_060--Hb_003018_150 Hb_002246_030 Hb_002246_030 Hb_001210_060--Hb_002246_030 Hb_000329_440 Hb_000329_440 Hb_001210_060--Hb_000329_440 Hb_001210_060--Hb_027472_060 Hb_015934_090 Hb_015934_090 Hb_163950_050--Hb_015934_090 Hb_002986_030 Hb_002986_030 Hb_163950_050--Hb_002986_030 Hb_163950_050--Hb_004032_190 Hb_001206_100 Hb_001206_100 Hb_163950_050--Hb_001206_100 Hb_000364_090 Hb_000364_090 Hb_004032_190--Hb_000364_090 Hb_016277_030 Hb_016277_030 Hb_004032_190--Hb_016277_030 Hb_004032_190--Hb_001206_100 Hb_009421_070 Hb_009421_070 Hb_004032_190--Hb_009421_070 Hb_004466_090 Hb_004466_090 Hb_004032_190--Hb_004466_090 Hb_000784_060 Hb_000784_060 Hb_004032_190--Hb_000784_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0294451 0.83049 2.58784 6.24257 0.0310729 0.042897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0726469 0.10863 0.143307 0.474904 6.3491

CAGE analysis