Hb_000103_140

Information

Type -
Description -
Location Contig103: 116028-118717
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15610g
description POPTRDRAFT_873265; hypothetical protein
nr
ID XP_002312545.2
description ribosomal protein S3a [Populus trichocarpa]
swissprot
ID Q8GTE3
description 40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1
trembl
ID B9HK94
description 40S ribosomal protein S3a OS=Populus trichocarpa GN=POPTR_0008s15610g PE=3 SV=2
Gene Ontology
ID GO:0022627
description 40s ribosomal protein s3a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01191: 115916-118729
cDNA
(Sanger)
(ID:Location)		 014_O07.ab1: 116395-118729 , 027_K18.ab1: 116378-118640 , 049_M21.ab1: 116715-118658

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_140 0.0 - - ribosomal protein S3a [Populus trichocarpa]
2 Hb_000175_070 0.0755286971 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
3 Hb_007193_100 0.0756924854 - - syntaxin family protein [Populus trichocarpa]
4 Hb_009543_030 0.0839165166 - - prefoldin subunit 1 [Jatropha curcas]
5 Hb_063134_010 0.088056475 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
6 Hb_008173_120 0.0899573953 - - conserved hypothetical protein [Ricinus communis]
7 Hb_029510_140 0.0899789487 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
8 Hb_000684_230 0.0903152285 - - 40S ribosomal protein S23, putative [Ricinus communis]
9 Hb_000749_150 0.0906276372 - - -
10 Hb_141131_010 0.0908144418 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
11 Hb_001246_100 0.0910592993 - - Ras-related small GTP-binding family protein [Theobroma cacao]
12 Hb_000023_140 0.0912945253 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
13 Hb_003038_030 0.0936458402 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
14 Hb_000510_090 0.0937822233 - - 40S ribosomal protein S15 [Morus notabilis]
15 Hb_000442_160 0.09537179 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
16 Hb_133271_020 0.0955381734 - - prohibitin, putative [Ricinus communis]
17 Hb_143813_010 0.0975226269 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
18 Hb_118419_020 0.098034295 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
19 Hb_000617_020 0.0997272214 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
20 Hb_004545_060 0.0999671219 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]

Gene co-expression network

sample Hb_000103_140 Hb_000103_140 Hb_000175_070 Hb_000175_070 Hb_000103_140--Hb_000175_070 Hb_007193_100 Hb_007193_100 Hb_000103_140--Hb_007193_100 Hb_009543_030 Hb_009543_030 Hb_000103_140--Hb_009543_030 Hb_063134_010 Hb_063134_010 Hb_000103_140--Hb_063134_010 Hb_008173_120 Hb_008173_120 Hb_000103_140--Hb_008173_120 Hb_029510_140 Hb_029510_140 Hb_000103_140--Hb_029510_140 Hb_000175_070--Hb_007193_100 Hb_000317_430 Hb_000317_430 Hb_000175_070--Hb_000317_430 Hb_000175_070--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_000175_070--Hb_118419_020 Hb_006788_070 Hb_006788_070 Hb_000175_070--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_000175_070--Hb_009558_020 Hb_007193_100--Hb_063134_010 Hb_007193_100--Hb_000317_430 Hb_007193_100--Hb_029510_140 Hb_007193_100--Hb_118419_020 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100 Hb_009543_030--Hb_000175_070 Hb_000510_090 Hb_000510_090 Hb_009543_030--Hb_000510_090 Hb_009543_030--Hb_007193_100 Hb_004453_150 Hb_004453_150 Hb_009543_030--Hb_004453_150 Hb_000684_230 Hb_000684_230 Hb_009543_030--Hb_000684_230 Hb_063134_010--Hb_029510_140 Hb_003005_020 Hb_003005_020 Hb_063134_010--Hb_003005_020 Hb_063134_010--Hb_000175_070 Hb_000172_370 Hb_000172_370 Hb_063134_010--Hb_000172_370 Hb_000384_090 Hb_000384_090 Hb_063134_010--Hb_000384_090 Hb_008173_120--Hb_000684_230 Hb_000230_540 Hb_000230_540 Hb_008173_120--Hb_000230_540 Hb_008173_120--Hb_007193_100 Hb_007317_060 Hb_007317_060 Hb_008173_120--Hb_007317_060 Hb_004007_100 Hb_004007_100 Hb_008173_120--Hb_004007_100 Hb_001518_040 Hb_001518_040 Hb_029510_140--Hb_001518_040 Hb_029510_140--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_029510_140--Hb_010436_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
194.818 31.9478 58.0147 95.902 174.191 363.742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
183.471 247.324 209.95 98.8574 31.3184

CAGE analysis