Hb_000103_200

Information

Type -
Description -
Location Contig103: 172862-175044
Sequence    

Annotation

kegg
ID rcu:RCOM_0911150
description calmodulin binding protein, putative
nr
ID XP_002517079.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID Q8L4D8
description Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
trembl
ID B9RTL0
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0911150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01197: 172412-174731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_200 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_004137_040 0.0657361799 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
3 Hb_000230_300 0.065765513 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
4 Hb_002221_060 0.06813752 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
5 Hb_005762_010 0.0701015742 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
6 Hb_000928_030 0.0724441551 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
7 Hb_000028_190 0.0737161098 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
8 Hb_002119_100 0.0757528162 - - cytochrome B561, putative [Ricinus communis]
9 Hb_052530_020 0.078834859 - - cytochrome B5 isoform 1, putative [Ricinus communis]
10 Hb_003723_050 0.0803983037 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000358_260 0.082617158 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
12 Hb_000684_070 0.0842042243 - - PREDICTED: uncharacterized protein LOC105642198 isoform X1 [Jatropha curcas]
13 Hb_000915_170 0.0845495612 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
14 Hb_003417_050 0.0859502395 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_010883_170 0.0868566999 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
16 Hb_006816_380 0.0870288378 - - PREDICTED: kinesin-4-like [Jatropha curcas]
17 Hb_009023_010 0.089989555 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
18 Hb_002740_050 0.090212623 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
19 Hb_000003_380 0.0906719794 - - conserved hypothetical protein [Ricinus communis]
20 Hb_128986_010 0.0914810844 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000103_200 Hb_000103_200 Hb_004137_040 Hb_004137_040 Hb_000103_200--Hb_004137_040 Hb_000230_300 Hb_000230_300 Hb_000103_200--Hb_000230_300 Hb_002221_060 Hb_002221_060 Hb_000103_200--Hb_002221_060 Hb_005762_010 Hb_005762_010 Hb_000103_200--Hb_005762_010 Hb_000928_030 Hb_000928_030 Hb_000103_200--Hb_000928_030 Hb_000028_190 Hb_000028_190 Hb_000103_200--Hb_000028_190 Hb_004137_040--Hb_000028_190 Hb_000483_450 Hb_000483_450 Hb_004137_040--Hb_000483_450 Hb_004137_040--Hb_002221_060 Hb_004137_040--Hb_000928_030 Hb_004137_040--Hb_000230_300 Hb_000230_300--Hb_002221_060 Hb_000003_380 Hb_000003_380 Hb_000230_300--Hb_000003_380 Hb_000230_300--Hb_005762_010 Hb_000230_300--Hb_000028_190 Hb_002221_060--Hb_000003_380 Hb_002221_060--Hb_000483_450 Hb_002221_060--Hb_000928_030 Hb_003339_010 Hb_003339_010 Hb_005762_010--Hb_003339_010 Hb_008054_030 Hb_008054_030 Hb_005762_010--Hb_008054_030 Hb_009023_010 Hb_009023_010 Hb_005762_010--Hb_009023_010 Hb_005762_010--Hb_004137_040 Hb_000928_030--Hb_000028_190 Hb_052530_020 Hb_052530_020 Hb_000928_030--Hb_052530_020 Hb_000358_260 Hb_000358_260 Hb_000928_030--Hb_000358_260 Hb_002150_090 Hb_002150_090 Hb_000028_190--Hb_002150_090 Hb_000028_190--Hb_000483_450 Hb_001674_010 Hb_001674_010 Hb_000028_190--Hb_001674_010 Hb_000028_190--Hb_008054_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0516496 0.673739 7.60552 13.0527 0.0388086 0.0128249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0294012 0 0 0.0461334 9.31108

CAGE analysis