Hb_000103_240

Information

Type -
Description -
Location Contig103: 208536-210282
Sequence    

Annotation

kegg
ID rcu:RCOM_0911100
description acireductone dioxygenase, putative
nr
ID XP_012069696.1
description PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Jatropha curcas]
swissprot
ID D7T737
description 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Vitis vinifera GN=VIT_05s0020g04070 PE=3 SV=1
trembl
ID A0A067KZ71
description 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Jatropha curcas GN=JCGZ_02226 PE=3 SV=1
Gene Ontology
ID GO:0005634
description -dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01206: 208710-210399 , PASA_asmbl_01207: 208710-210399 , PASA_asmbl_01208: 211016-212135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_240 0.0 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Jatropha curcas]
2 Hb_000992_090 0.08709407 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
3 Hb_003905_030 0.1067474792 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
4 Hb_023344_040 0.1112523011 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001135_170 0.1131032447 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
6 Hb_106552_030 0.1165922877 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
7 Hb_028960_010 0.1194915042 - - phosphoglycerate kinase, putative [Ricinus communis]
8 Hb_011344_030 0.1196527379 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
9 Hb_156850_020 0.1198292932 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
10 Hb_003362_050 0.120055366 - - PREDICTED: probable sucrose-phosphate synthase 3 [Jatropha curcas]
11 Hb_001517_010 0.1205718836 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000049_330 0.1231173174 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
13 Hb_010080_070 0.1257391631 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
14 Hb_011900_020 0.1321775789 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
15 Hb_003053_080 0.1373811775 - - conserved hypothetical protein [Ricinus communis]
16 Hb_123689_010 0.1382279838 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
17 Hb_000009_470 0.1418088068 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
18 Hb_000261_390 0.1419308284 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
19 Hb_107647_010 0.1449387669 - - PREDICTED: uncharacterized protein ycf39 [Jatropha curcas]
20 Hb_004631_020 0.1453808045 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_000103_240 Hb_000103_240 Hb_000992_090 Hb_000992_090 Hb_000103_240--Hb_000992_090 Hb_003905_030 Hb_003905_030 Hb_000103_240--Hb_003905_030 Hb_023344_040 Hb_023344_040 Hb_000103_240--Hb_023344_040 Hb_001135_170 Hb_001135_170 Hb_000103_240--Hb_001135_170 Hb_106552_030 Hb_106552_030 Hb_000103_240--Hb_106552_030 Hb_028960_010 Hb_028960_010 Hb_000103_240--Hb_028960_010 Hb_000992_090--Hb_023344_040 Hb_000992_090--Hb_001135_170 Hb_011344_030 Hb_011344_030 Hb_000992_090--Hb_011344_030 Hb_000009_470 Hb_000009_470 Hb_000992_090--Hb_000009_470 Hb_000029_390 Hb_000029_390 Hb_000992_090--Hb_000029_390 Hb_010080_070 Hb_010080_070 Hb_003905_030--Hb_010080_070 Hb_000360_010 Hb_000360_010 Hb_003905_030--Hb_000360_010 Hb_156850_020 Hb_156850_020 Hb_003905_030--Hb_156850_020 Hb_001257_110 Hb_001257_110 Hb_003905_030--Hb_001257_110 Hb_011900_020 Hb_011900_020 Hb_003905_030--Hb_011900_020 Hb_023344_040--Hb_011344_030 Hb_000111_460 Hb_000111_460 Hb_023344_040--Hb_000111_460 Hb_023344_040--Hb_001135_170 Hb_023344_040--Hb_000009_470 Hb_014361_120 Hb_014361_120 Hb_023344_040--Hb_014361_120 Hb_004631_020 Hb_004631_020 Hb_001135_170--Hb_004631_020 Hb_001135_170--Hb_011344_030 Hb_001832_180 Hb_001832_180 Hb_001135_170--Hb_001832_180 Hb_000261_390 Hb_000261_390 Hb_001135_170--Hb_000261_390 Hb_106552_030--Hb_156850_020 Hb_106552_030--Hb_010080_070 Hb_106552_030--Hb_000992_090 Hb_012940_020 Hb_012940_020 Hb_106552_030--Hb_012940_020 Hb_068804_110 Hb_068804_110 Hb_106552_030--Hb_068804_110 Hb_106552_030--Hb_000360_010 Hb_028960_010--Hb_012940_020 Hb_028960_010--Hb_156850_020 Hb_028960_010--Hb_068804_110 Hb_001691_180 Hb_001691_180 Hb_028960_010--Hb_001691_180 Hb_000359_070 Hb_000359_070 Hb_028960_010--Hb_000359_070 Hb_028960_010--Hb_106552_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.73697 15.3328 113.079 26.2391 1.15466 2.23194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.79922 5.48887 10.4755 4.38098 407.479

CAGE analysis