Hb_000103_250

Information

Type transcription factor
Description TF Family: Tify
Location Contig103: 211964-216643
Sequence    

Annotation

kegg
ID rcu:RCOM_0911090
description hypothetical protein
nr
ID XP_012069699.1
description PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
swissprot
ID Q8GY55
description Protein TIFY 4B OS=Arabidopsis thaliana GN=TIFY4B PE=1 SV=1
trembl
ID B9RTK4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0911090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01208: 211016-212135 , PASA_asmbl_01210: 214421-214802 , PASA_asmbl_01211: 212276-215855 , PASA_asmbl_01212: 212279-215855 , PASA_asmbl_01213: 216107-216447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_250 0.0 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
2 Hb_000066_030 0.1249711119 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
3 Hb_000703_280 0.1271063183 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
4 Hb_005218_020 0.1280413088 - - Uncharacterized protein isoform 3 [Theobroma cacao]
5 Hb_000742_020 0.1305633211 - - ARF GTPase activator, putative [Ricinus communis]
6 Hb_000889_100 0.1310369993 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
7 Hb_000665_180 0.1359344343 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
8 Hb_000622_350 0.1362228782 - - PREDICTED: protein ABIL1 [Jatropha curcas]
9 Hb_091349_010 0.1364055388 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
10 Hb_000197_020 0.1368026171 - - PREDICTED: protein RER1A [Jatropha curcas]
11 Hb_004088_040 0.1378160724 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
12 Hb_000765_060 0.140737107 - - Alcohol dehydrogenase-like 6 [Glycine soja]
13 Hb_001609_040 0.1425793109 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
14 Hb_000019_180 0.1438527713 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
15 Hb_003998_040 0.146980103 - - organic anion transporter, putative [Ricinus communis]
16 Hb_000173_060 0.147124063 - - Dual specificity protein phosphatase, putative [Ricinus communis]
17 Hb_000094_290 0.1500181829 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
18 Hb_007765_040 0.1502254871 - - Cytosolic enolase isoform 3 [Theobroma cacao]
19 Hb_000638_070 0.150501063 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
20 Hb_000395_110 0.1505161163 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]

Gene co-expression network

sample Hb_000103_250 Hb_000103_250 Hb_000066_030 Hb_000066_030 Hb_000103_250--Hb_000066_030 Hb_000703_280 Hb_000703_280 Hb_000103_250--Hb_000703_280 Hb_005218_020 Hb_005218_020 Hb_000103_250--Hb_005218_020 Hb_000742_020 Hb_000742_020 Hb_000103_250--Hb_000742_020 Hb_000889_100 Hb_000889_100 Hb_000103_250--Hb_000889_100 Hb_000665_180 Hb_000665_180 Hb_000103_250--Hb_000665_180 Hb_003998_040 Hb_003998_040 Hb_000066_030--Hb_003998_040 Hb_000066_030--Hb_005218_020 Hb_000197_020 Hb_000197_020 Hb_000066_030--Hb_000197_020 Hb_007765_040 Hb_007765_040 Hb_000066_030--Hb_007765_040 Hb_000371_090 Hb_000371_090 Hb_000066_030--Hb_000371_090 Hb_011214_160 Hb_011214_160 Hb_000066_030--Hb_011214_160 Hb_000012_080 Hb_000012_080 Hb_000703_280--Hb_000012_080 Hb_021943_090 Hb_021943_090 Hb_000703_280--Hb_021943_090 Hb_001904_050 Hb_001904_050 Hb_000703_280--Hb_001904_050 Hb_026889_040 Hb_026889_040 Hb_000703_280--Hb_026889_040 Hb_000244_170 Hb_000244_170 Hb_000703_280--Hb_000244_170 Hb_005218_020--Hb_003998_040 Hb_005218_020--Hb_007765_040 Hb_000917_130 Hb_000917_130 Hb_005218_020--Hb_000917_130 Hb_003529_030 Hb_003529_030 Hb_005218_020--Hb_003529_030 Hb_004055_120 Hb_004055_120 Hb_005218_020--Hb_004055_120 Hb_013394_050 Hb_013394_050 Hb_000742_020--Hb_013394_050 Hb_001609_040 Hb_001609_040 Hb_000742_020--Hb_001609_040 Hb_007441_080 Hb_007441_080 Hb_000742_020--Hb_007441_080 Hb_005993_010 Hb_005993_010 Hb_000742_020--Hb_005993_010 Hb_000069_640 Hb_000069_640 Hb_000742_020--Hb_000069_640 Hb_000742_020--Hb_000244_170 Hb_051257_010 Hb_051257_010 Hb_000889_100--Hb_051257_010 Hb_017014_010 Hb_017014_010 Hb_000889_100--Hb_017014_010 Hb_000035_220 Hb_000035_220 Hb_000889_100--Hb_000035_220 Hb_164010_050 Hb_164010_050 Hb_000889_100--Hb_164010_050 Hb_000622_350 Hb_000622_350 Hb_000889_100--Hb_000622_350 Hb_000094_290 Hb_000094_290 Hb_000889_100--Hb_000094_290 Hb_000008_340 Hb_000008_340 Hb_000665_180--Hb_000008_340 Hb_000395_110 Hb_000395_110 Hb_000665_180--Hb_000395_110 Hb_000638_070 Hb_000638_070 Hb_000665_180--Hb_000638_070 Hb_185830_060 Hb_185830_060 Hb_000665_180--Hb_185830_060 Hb_002955_020 Hb_002955_020 Hb_000665_180--Hb_002955_020 Hb_002193_060 Hb_002193_060 Hb_000665_180--Hb_002193_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.480346 0.220374 1.36003 3.05321 0.230461 1.01635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.372943 0.684505 1.09046 0.822889 1.28042

CAGE analysis