Hb_000103_260

Information

Type -
Description -
Location Contig103: 220974-221574
Sequence    

Annotation

kegg
ID rcu:RCOM_0911080
description hypothetical protein
nr
ID XP_012069700.1
description PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
swissprot
ID Q2V3I3
description EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana GN=EPFL4 PE=1 SV=1
trembl
ID A0A067L843
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02227 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01214: 221102-221763
cDNA
(Sanger)
(ID:Location)		 032_P11.ab1: 221321-221547

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_260 0.0 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
2 Hb_001584_080 0.1522691067 - - hypothetical protein JCGZ_23206 [Jatropha curcas]
3 Hb_003940_040 0.1848051006 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002667_060 0.1863942159 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
5 Hb_000183_040 0.186682685 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
6 Hb_006636_010 0.1911711403 - - PREDICTED: uncharacterized protein LOC105637987 [Jatropha curcas]
7 Hb_000421_210 0.1944099237 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005143_040 0.1945014343 - - hypothetical protein JCGZ_17315 [Jatropha curcas]
9 Hb_010142_030 0.1952116384 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_050147_010 0.1991212533 - - hypothetical protein B456_005G052100 [Gossypium raimondii]
11 Hb_115825_010 0.1996645586 - - phosphate transporter [Manihot esculenta]
12 Hb_033642_110 0.1997882158 - - PREDICTED: MLO-like protein 4 [Jatropha curcas]
13 Hb_001481_120 0.201070778 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
14 Hb_000617_260 0.2029020685 rubber biosynthesis Gene Name: SRPP2 small rubber particle protein [Hevea brasiliensis]
15 Hb_005054_290 0.2062755272 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
16 Hb_007403_060 0.206794116 - - PREDICTED: CAAX prenyl protease 2 [Jatropha curcas]
17 Hb_038237_010 0.2068706755 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
18 Hb_000331_210 0.2076459036 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
19 Hb_000023_280 0.2077563106 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
20 Hb_000500_090 0.2087997878 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000103_260 Hb_000103_260 Hb_001584_080 Hb_001584_080 Hb_000103_260--Hb_001584_080 Hb_003940_040 Hb_003940_040 Hb_000103_260--Hb_003940_040 Hb_002667_060 Hb_002667_060 Hb_000103_260--Hb_002667_060 Hb_000183_040 Hb_000183_040 Hb_000103_260--Hb_000183_040 Hb_006636_010 Hb_006636_010 Hb_000103_260--Hb_006636_010 Hb_000421_210 Hb_000421_210 Hb_000103_260--Hb_000421_210 Hb_007403_060 Hb_007403_060 Hb_001584_080--Hb_007403_060 Hb_033642_110 Hb_033642_110 Hb_001584_080--Hb_033642_110 Hb_005143_040 Hb_005143_040 Hb_001584_080--Hb_005143_040 Hb_000500_090 Hb_000500_090 Hb_001584_080--Hb_000500_090 Hb_004899_050 Hb_004899_050 Hb_001584_080--Hb_004899_050 Hb_002596_040 Hb_002596_040 Hb_001584_080--Hb_002596_040 Hb_099878_030 Hb_099878_030 Hb_003940_040--Hb_099878_030 Hb_010142_030 Hb_010142_030 Hb_003940_040--Hb_010142_030 Hb_000392_190 Hb_000392_190 Hb_003940_040--Hb_000392_190 Hb_004109_310 Hb_004109_310 Hb_003940_040--Hb_004109_310 Hb_000023_280 Hb_000023_280 Hb_003940_040--Hb_000023_280 Hb_000140_280 Hb_000140_280 Hb_003940_040--Hb_000140_280 Hb_002667_060--Hb_010142_030 Hb_000862_030 Hb_000862_030 Hb_002667_060--Hb_000862_030 Hb_001314_010 Hb_001314_010 Hb_002667_060--Hb_001314_010 Hb_001492_020 Hb_001492_020 Hb_002667_060--Hb_001492_020 Hb_003693_070 Hb_003693_070 Hb_002667_060--Hb_003693_070 Hb_002667_060--Hb_000421_210 Hb_050455_010 Hb_050455_010 Hb_000183_040--Hb_050455_010 Hb_000069_160 Hb_000069_160 Hb_000183_040--Hb_000069_160 Hb_003656_140 Hb_003656_140 Hb_000183_040--Hb_003656_140 Hb_137403_010 Hb_137403_010 Hb_000183_040--Hb_137403_010 Hb_150360_010 Hb_150360_010 Hb_000183_040--Hb_150360_010 Hb_002023_020 Hb_002023_020 Hb_000183_040--Hb_002023_020 Hb_038237_010 Hb_038237_010 Hb_006636_010--Hb_038237_010 Hb_000106_140 Hb_000106_140 Hb_006636_010--Hb_000106_140 Hb_006636_010--Hb_003940_040 Hb_005914_080 Hb_005914_080 Hb_006636_010--Hb_005914_080 Hb_000009_240 Hb_000009_240 Hb_006636_010--Hb_000009_240 Hb_006636_010--Hb_005143_040 Hb_000003_480 Hb_000003_480 Hb_000421_210--Hb_000003_480 Hb_001279_140 Hb_001279_140 Hb_000421_210--Hb_001279_140 Hb_000260_220 Hb_000260_220 Hb_000421_210--Hb_000260_220 Hb_000031_220 Hb_000031_220 Hb_000421_210--Hb_000031_220 Hb_000640_120 Hb_000640_120 Hb_000421_210--Hb_000640_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.81473 1.6474 0.888462 7.01708 2.47238 5.53808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.23903 2.58509 3.86325 6.18326 0

CAGE analysis