Hb_000103_270

Information

Type -
Description -
Location Contig103: 235643-238295
Sequence    

Annotation

kegg
ID fve:101296762
description 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like
nr
ID XP_004296576.1
description PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
swissprot
ID F6HDT7
description 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Vitis vinifera GN=VIT_05s0020g04080 PE=3 SV=1
trembl
ID A5B5W6
description 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Vitis vinifera GN=VITISV_012500 PE=3 SV=1
Gene Ontology
ID GO:0005634
description -dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01215: 233571-238680 , PASA_asmbl_01216: 233584-238520 , PASA_asmbl_01217: 234377-234704
cDNA
(Sanger)
(ID:Location)		 027_J19.ab1: 233571-238335 , 045_M03.ab1: 233571-238465

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_270 0.0 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
2 Hb_000210_120 0.0715565696 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
3 Hb_009687_010 0.0828206066 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
4 Hb_000096_160 0.086243927 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
5 Hb_005914_170 0.0905804709 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
6 Hb_006698_030 0.0971978511 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
7 Hb_003098_020 0.1008530533 - - 40S ribosomal protein S5B [Hevea brasiliensis]
8 Hb_104265_040 0.1012709018 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003633_050 0.1038065239 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
10 Hb_109002_020 0.1065594566 - - PREDICTED: CTP synthase-like [Jatropha curcas]
11 Hb_000510_240 0.1070481971 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
12 Hb_000181_050 0.1071129665 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
13 Hb_001653_020 0.1082330527 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
14 Hb_016522_010 0.1103967899 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
15 Hb_000621_020 0.1119863398 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
16 Hb_004734_040 0.1124603404 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
17 Hb_001085_240 0.1125137489 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
18 Hb_005305_150 0.1125820732 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
19 Hb_001157_110 0.1137536211 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
20 Hb_001215_040 0.1139806884 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000103_270 Hb_000103_270 Hb_000210_120 Hb_000210_120 Hb_000103_270--Hb_000210_120 Hb_009687_010 Hb_009687_010 Hb_000103_270--Hb_009687_010 Hb_000096_160 Hb_000096_160 Hb_000103_270--Hb_000096_160 Hb_005914_170 Hb_005914_170 Hb_000103_270--Hb_005914_170 Hb_006698_030 Hb_006698_030 Hb_000103_270--Hb_006698_030 Hb_003098_020 Hb_003098_020 Hb_000103_270--Hb_003098_020 Hb_000210_120--Hb_005914_170 Hb_000210_120--Hb_003098_020 Hb_007928_030 Hb_007928_030 Hb_000210_120--Hb_007928_030 Hb_011344_120 Hb_011344_120 Hb_000210_120--Hb_011344_120 Hb_000136_350 Hb_000136_350 Hb_000210_120--Hb_000136_350 Hb_005914_010 Hb_005914_010 Hb_009687_010--Hb_005914_010 Hb_105602_010 Hb_105602_010 Hb_009687_010--Hb_105602_010 Hb_002027_140 Hb_002027_140 Hb_009687_010--Hb_002027_140 Hb_009687_010--Hb_006698_030 Hb_000329_760 Hb_000329_760 Hb_009687_010--Hb_000329_760 Hb_003633_050 Hb_003633_050 Hb_000096_160--Hb_003633_050 Hb_001085_240 Hb_001085_240 Hb_000096_160--Hb_001085_240 Hb_000096_160--Hb_005914_170 Hb_000228_110 Hb_000228_110 Hb_000096_160--Hb_000228_110 Hb_001157_110 Hb_001157_110 Hb_000096_160--Hb_001157_110 Hb_005914_170--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_005914_170--Hb_001314_050 Hb_031862_100 Hb_031862_100 Hb_005914_170--Hb_031862_100 Hb_005914_170--Hb_003633_050 Hb_023001_040 Hb_023001_040 Hb_005914_170--Hb_023001_040 Hb_006698_030--Hb_003098_020 Hb_006698_030--Hb_005914_010 Hb_000015_030 Hb_000015_030 Hb_006698_030--Hb_000015_030 Hb_005305_150 Hb_005305_150 Hb_006698_030--Hb_005305_150 Hb_000496_120 Hb_000496_120 Hb_006698_030--Hb_000496_120 Hb_003098_020--Hb_005305_150 Hb_186982_040 Hb_186982_040 Hb_003098_020--Hb_186982_040 Hb_003098_020--Hb_000136_350 Hb_000896_040 Hb_000896_040 Hb_003098_020--Hb_000896_040 Hb_003098_020--Hb_005914_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
182.818 180.865 107.292 331.415 168.792 208.11
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
418.414 506.016 292.144 641.952 195.414

CAGE analysis