Hb_000103_290

Information

Type -
Description -
Location Contig103: 256856-266777
Sequence    

Annotation

kegg
ID pop:POPTR_0010s09200g
description POPTRDRAFT_821951; hypothetical protein
nr
ID XP_012069707.1
description PREDICTED: dymeclin isoform X1 [Jatropha curcas]
swissprot
ID Q28BM0
description Dymeclin OS=Xenopus tropicalis GN=dym PE=2 SV=1
trembl
ID A0A067KVU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02230 PE=4 SV=1
Gene Ontology
ID GO:0008284
description dymeclin isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01219: 265640-266057 , PASA_asmbl_01220: 259148-266732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_290 0.0 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
2 Hb_048476_080 0.055846152 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
3 Hb_016172_030 0.0601216449 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
4 Hb_000954_010 0.0603674909 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
5 Hb_060980_010 0.0613728861 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
6 Hb_027506_010 0.0649190376 - - PREDICTED: cullin-4 [Jatropha curcas]
7 Hb_024650_080 0.0672560456 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
8 Hb_007245_020 0.068166321 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
9 Hb_000406_210 0.0686291377 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
10 Hb_000270_190 0.0699536261 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
11 Hb_006100_020 0.0704890377 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
12 Hb_000173_190 0.0709747585 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003626_070 0.071716985 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
14 Hb_004044_050 0.072427853 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
15 Hb_073171_070 0.0726796505 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
16 Hb_001817_170 0.0742975233 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
17 Hb_000020_160 0.0754165002 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
18 Hb_003758_010 0.0755665256 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
19 Hb_006663_060 0.075596027 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
20 Hb_002639_040 0.0762502794 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_000103_290 Hb_000103_290 Hb_048476_080 Hb_048476_080 Hb_000103_290--Hb_048476_080 Hb_016172_030 Hb_016172_030 Hb_000103_290--Hb_016172_030 Hb_000954_010 Hb_000954_010 Hb_000103_290--Hb_000954_010 Hb_060980_010 Hb_060980_010 Hb_000103_290--Hb_060980_010 Hb_027506_010 Hb_027506_010 Hb_000103_290--Hb_027506_010 Hb_024650_080 Hb_024650_080 Hb_000103_290--Hb_024650_080 Hb_000844_050 Hb_000844_050 Hb_048476_080--Hb_000844_050 Hb_003661_010 Hb_003661_010 Hb_048476_080--Hb_003661_010 Hb_001507_050 Hb_001507_050 Hb_048476_080--Hb_001507_050 Hb_006100_020 Hb_006100_020 Hb_048476_080--Hb_006100_020 Hb_001008_130 Hb_001008_130 Hb_048476_080--Hb_001008_130 Hb_016172_030--Hb_060980_010 Hb_021165_010 Hb_021165_010 Hb_016172_030--Hb_021165_010 Hb_004037_020 Hb_004037_020 Hb_016172_030--Hb_004037_020 Hb_016172_030--Hb_027506_010 Hb_065500_020 Hb_065500_020 Hb_016172_030--Hb_065500_020 Hb_016172_030--Hb_024650_080 Hb_000702_090 Hb_000702_090 Hb_000954_010--Hb_000702_090 Hb_000954_010--Hb_016172_030 Hb_000336_020 Hb_000336_020 Hb_000954_010--Hb_000336_020 Hb_002045_170 Hb_002045_170 Hb_000954_010--Hb_002045_170 Hb_000954_010--Hb_060980_010 Hb_060980_010--Hb_027506_010 Hb_019840_030 Hb_019840_030 Hb_060980_010--Hb_019840_030 Hb_060980_010--Hb_065500_020 Hb_000409_050 Hb_000409_050 Hb_060980_010--Hb_000409_050 Hb_000001_170 Hb_000001_170 Hb_060980_010--Hb_000001_170 Hb_000206_160 Hb_000206_160 Hb_027506_010--Hb_000206_160 Hb_003758_010 Hb_003758_010 Hb_027506_010--Hb_003758_010 Hb_027506_010--Hb_000409_050 Hb_027506_010--Hb_065500_020 Hb_001408_110 Hb_001408_110 Hb_024650_080--Hb_001408_110 Hb_022425_030 Hb_022425_030 Hb_024650_080--Hb_022425_030 Hb_000926_150 Hb_000926_150 Hb_024650_080--Hb_000926_150 Hb_000020_160 Hb_000020_160 Hb_024650_080--Hb_000020_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.55084 13.5888 12.3306 14.564 9.02285 5.5949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.07846 5.77926 5.80284 12.4759 15.3273

CAGE analysis