Hb_000103_300

Information

Type -
Description -
Location Contig103: 267821-272168
Sequence    

Annotation

kegg
ID rcu:RCOM_0911030
description aldo/keto reductase, putative (EC:1.1.1.65)
nr
ID XP_012069709.1
description PREDICTED: perakine reductase-like [Jatropha curcas]
swissprot
ID Q3L181
description Perakine reductase OS=Rauvolfia serpentina GN=PR PE=1 SV=1
trembl
ID A0A067L6Y3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02233 PE=4 SV=1
Gene Ontology
ID GO:0050236
description perakine reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01221: 269495-270673 , PASA_asmbl_01222: 271039-272092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_300 0.0 - - PREDICTED: perakine reductase-like [Jatropha curcas]
2 Hb_000152_570 0.0474551771 - - 21 kDa protein precursor, putative [Ricinus communis]
3 Hb_000193_070 0.0564711158 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
4 Hb_002284_060 0.0578768875 - - sugar transporter, putative [Ricinus communis]
5 Hb_002391_240 0.0634959116 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006154_010 0.0770930414 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
7 Hb_169077_030 0.0821874799 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
8 Hb_007370_010 0.0846481267 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
9 Hb_003376_140 0.0885048659 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
10 Hb_113766_010 0.0902244491 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
11 Hb_001079_050 0.0921790831 - - Calmodulin, putative [Ricinus communis]
12 Hb_003894_180 0.0948133232 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
13 Hb_141194_020 0.099298063 - - carbohydrate transporter, putative [Ricinus communis]
14 Hb_001410_080 0.1050774057 - - ring finger protein, putative [Ricinus communis]
15 Hb_004466_090 0.1083195551 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012395_060 0.1096881814 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
17 Hb_002809_080 0.1118977429 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000003_580 0.1132655337 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002370_050 0.1178411124 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
20 Hb_003633_170 0.1191780786 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000103_300 Hb_000103_300 Hb_000152_570 Hb_000152_570 Hb_000103_300--Hb_000152_570 Hb_000193_070 Hb_000193_070 Hb_000103_300--Hb_000193_070 Hb_002284_060 Hb_002284_060 Hb_000103_300--Hb_002284_060 Hb_002391_240 Hb_002391_240 Hb_000103_300--Hb_002391_240 Hb_006154_010 Hb_006154_010 Hb_000103_300--Hb_006154_010 Hb_169077_030 Hb_169077_030 Hb_000103_300--Hb_169077_030 Hb_000152_570--Hb_000193_070 Hb_000152_570--Hb_002284_060 Hb_000152_570--Hb_002391_240 Hb_003894_180 Hb_003894_180 Hb_000152_570--Hb_003894_180 Hb_007370_010 Hb_007370_010 Hb_000152_570--Hb_007370_010 Hb_000193_070--Hb_002391_240 Hb_000193_070--Hb_002284_060 Hb_000193_070--Hb_006154_010 Hb_000193_070--Hb_169077_030 Hb_004466_090 Hb_004466_090 Hb_002284_060--Hb_004466_090 Hb_002284_060--Hb_002391_240 Hb_002284_060--Hb_003894_180 Hb_113766_010 Hb_113766_010 Hb_002391_240--Hb_113766_010 Hb_002391_240--Hb_007370_010 Hb_001079_050 Hb_001079_050 Hb_006154_010--Hb_001079_050 Hb_003376_140 Hb_003376_140 Hb_006154_010--Hb_003376_140 Hb_006154_010--Hb_169077_030 Hb_006154_010--Hb_000152_570 Hb_169077_030--Hb_007370_010 Hb_012395_060 Hb_012395_060 Hb_169077_030--Hb_012395_060 Hb_169077_030--Hb_000152_570 Hb_005332_160 Hb_005332_160 Hb_169077_030--Hb_005332_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0173524 1.82093 2.90836 12.6678 0.066166 0.0181166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0396223 0.031168 0 2.54613 6.90944

CAGE analysis