Hb_000103_320

Information

Type -
Description -
Location Contig103: 277062-280424
Sequence    

Annotation

kegg
ID rcu:RCOM_0910970
description Stem-specific protein TSJT1, putative
nr
ID XP_002517063.1
description Stem-specific protein TSJT1, putative [Ricinus communis]
swissprot
ID P24805
description Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1
trembl
ID B9RTJ4
description Stem-specific protein TSJT1, putative OS=Ricinus communis GN=RCOM_0910970 PE=4 SV=1
Gene Ontology
ID GO:0005634
description stem-specific protein tsjt1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01223: 273656-276389 , PASA_asmbl_01226: 277206-280217
cDNA
(Sanger)
(ID:Location)		 013_J24.ab1: 277206-279871 , 014_E10.ab1: 277206-279954 , 028_A12.ab1: 277206-279833 , 033_N01.ab1: 277206-279935 , 036_I22.ab1: 277206-279958 , 038_L23.ab1: 277206-279949 , 041_A22.ab1: 277206-278911

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_320 0.0 - - Stem-specific protein TSJT1, putative [Ricinus communis]
2 Hb_000638_250 0.0634496334 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_006831_120 0.0645307667 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
4 Hb_003581_150 0.0664241016 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
5 Hb_152784_010 0.0684944328 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
6 Hb_001318_250 0.0730256627 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
7 Hb_007441_330 0.0748630384 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
8 Hb_021596_090 0.0773221405 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
9 Hb_000934_250 0.0798768569 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
10 Hb_000201_120 0.0803805799 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
11 Hb_000046_100 0.0827596367 - - NADH dehydrogenase, putative [Ricinus communis]
12 Hb_000340_570 0.084026904 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
13 Hb_028872_080 0.0844210959 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
14 Hb_118419_010 0.0846173019 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
15 Hb_033594_150 0.0854011957 - - unknown [Lotus japonicus]
16 Hb_010883_050 0.0858637656 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
17 Hb_007044_120 0.0877583902 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
18 Hb_007904_260 0.0892277834 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
19 Hb_010175_040 0.0904247373 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
20 Hb_148121_040 0.0907685302 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_320 Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_000103_320--Hb_000638_250 Hb_006831_120 Hb_006831_120 Hb_000103_320--Hb_006831_120 Hb_003581_150 Hb_003581_150 Hb_000103_320--Hb_003581_150 Hb_152784_010 Hb_152784_010 Hb_000103_320--Hb_152784_010 Hb_001318_250 Hb_001318_250 Hb_000103_320--Hb_001318_250 Hb_007441_330 Hb_007441_330 Hb_000103_320--Hb_007441_330 Hb_000638_250--Hb_152784_010 Hb_000261_140 Hb_000261_140 Hb_000638_250--Hb_000261_140 Hb_007044_120 Hb_007044_120 Hb_000638_250--Hb_007044_120 Hb_000638_250--Hb_006831_120 Hb_004696_080 Hb_004696_080 Hb_000638_250--Hb_004696_080 Hb_001776_160 Hb_001776_160 Hb_006831_120--Hb_001776_160 Hb_000340_570 Hb_000340_570 Hb_006831_120--Hb_000340_570 Hb_028872_080 Hb_028872_080 Hb_006831_120--Hb_028872_080 Hb_000140_050 Hb_000140_050 Hb_006831_120--Hb_000140_050 Hb_000201_120 Hb_000201_120 Hb_003581_150--Hb_000201_120 Hb_000934_250 Hb_000934_250 Hb_003581_150--Hb_000934_250 Hb_002830_020 Hb_002830_020 Hb_003581_150--Hb_002830_020 Hb_010175_040 Hb_010175_040 Hb_003581_150--Hb_010175_040 Hb_129204_030 Hb_129204_030 Hb_003581_150--Hb_129204_030 Hb_000317_390 Hb_000317_390 Hb_152784_010--Hb_000317_390 Hb_152784_010--Hb_001318_250 Hb_033594_150 Hb_033594_150 Hb_152784_010--Hb_033594_150 Hb_152784_010--Hb_004696_080 Hb_001318_250--Hb_000934_250 Hb_001124_090 Hb_001124_090 Hb_001318_250--Hb_001124_090 Hb_001318_250--Hb_000317_390 Hb_001016_030 Hb_001016_030 Hb_001318_250--Hb_001016_030 Hb_000996_140 Hb_000996_140 Hb_007441_330--Hb_000996_140 Hb_026053_020 Hb_026053_020 Hb_007441_330--Hb_026053_020 Hb_007441_330--Hb_010175_040 Hb_000826_100 Hb_000826_100 Hb_007441_330--Hb_000826_100 Hb_008071_020 Hb_008071_020 Hb_007441_330--Hb_008071_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
102.465 42.2337 86.9173 118.748 67.3432 77.2737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
192.541 193.921 179.395 50.0463 62.2634

CAGE analysis