Hb_000103_360

Information

Type -
Description -
Location Contig103: 310261-314092
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01235: 310521-313923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_360 0.0 - - -
2 Hb_006901_040 0.1797335287 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002233_090 0.1859783498 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
4 Hb_000453_080 0.1873314386 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000025_310 0.187470039 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005914_090 0.1924101082 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
7 Hb_001678_020 0.1951164707 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
8 Hb_006026_040 0.1958334392 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
9 Hb_000208_290 0.1986129963 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
10 Hb_000827_080 0.2045223388 - - catalytic, putative [Ricinus communis]
11 Hb_000395_140 0.2087294715 - - Oligopeptide transporter, putative [Ricinus communis]
12 Hb_002675_190 0.2090300085 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000016_180 0.2110094541 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
14 Hb_006455_080 0.2135925816 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
15 Hb_000926_120 0.2159188012 - - PREDICTED: aspartic proteinase A1-like [Jatropha curcas]
16 Hb_000384_040 0.216175192 - - PREDICTED: uncharacterized protein LOC105640093 [Jatropha curcas]
17 Hb_000771_160 0.2176287517 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
18 Hb_001477_010 0.2185370545 - - PREDICTED: dnaJ homolog subfamily B member 13-like [Cicer arietinum]
19 Hb_000248_050 0.219553592 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
20 Hb_139859_010 0.2202347257 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000103_360 Hb_000103_360 Hb_006901_040 Hb_006901_040 Hb_000103_360--Hb_006901_040 Hb_002233_090 Hb_002233_090 Hb_000103_360--Hb_002233_090 Hb_000453_080 Hb_000453_080 Hb_000103_360--Hb_000453_080 Hb_000025_310 Hb_000025_310 Hb_000103_360--Hb_000025_310 Hb_005914_090 Hb_005914_090 Hb_000103_360--Hb_005914_090 Hb_001678_020 Hb_001678_020 Hb_000103_360--Hb_001678_020 Hb_000212_280 Hb_000212_280 Hb_006901_040--Hb_000212_280 Hb_113216_010 Hb_113216_010 Hb_006901_040--Hb_113216_010 Hb_002675_190 Hb_002675_190 Hb_006901_040--Hb_002675_190 Hb_000016_180 Hb_000016_180 Hb_006901_040--Hb_000016_180 Hb_000213_060 Hb_000213_060 Hb_006901_040--Hb_000213_060 Hb_174865_050 Hb_174865_050 Hb_006901_040--Hb_174865_050 Hb_109168_010 Hb_109168_010 Hb_002233_090--Hb_109168_010 Hb_001959_050 Hb_001959_050 Hb_002233_090--Hb_001959_050 Hb_000395_140 Hb_000395_140 Hb_002233_090--Hb_000395_140 Hb_001040_170 Hb_001040_170 Hb_002233_090--Hb_001040_170 Hb_006091_030 Hb_006091_030 Hb_002233_090--Hb_006091_030 Hb_000926_120 Hb_000926_120 Hb_002233_090--Hb_000926_120 Hb_012016_020 Hb_012016_020 Hb_000453_080--Hb_012016_020 Hb_001582_030 Hb_001582_030 Hb_000453_080--Hb_001582_030 Hb_005000_270 Hb_005000_270 Hb_000453_080--Hb_005000_270 Hb_005635_010 Hb_005635_010 Hb_000453_080--Hb_005635_010 Hb_002105_080 Hb_002105_080 Hb_000453_080--Hb_002105_080 Hb_001486_120 Hb_001486_120 Hb_000453_080--Hb_001486_120 Hb_188964_010 Hb_188964_010 Hb_000025_310--Hb_188964_010 Hb_000025_310--Hb_001582_030 Hb_007441_070 Hb_007441_070 Hb_000025_310--Hb_007441_070 Hb_000771_160 Hb_000771_160 Hb_000025_310--Hb_000771_160 Hb_003581_020 Hb_003581_020 Hb_000025_310--Hb_003581_020 Hb_019871_020 Hb_019871_020 Hb_000025_310--Hb_019871_020 Hb_003299_090 Hb_003299_090 Hb_005914_090--Hb_003299_090 Hb_005914_090--Hb_000453_080 Hb_005914_090--Hb_012016_020 Hb_000347_150 Hb_000347_150 Hb_005914_090--Hb_000347_150 Hb_001431_070 Hb_001431_070 Hb_005914_090--Hb_001431_070 Hb_139859_010 Hb_139859_010 Hb_005914_090--Hb_139859_010 Hb_000101_160 Hb_000101_160 Hb_001678_020--Hb_000101_160 Hb_010620_010 Hb_010620_010 Hb_001678_020--Hb_010620_010 Hb_023323_010 Hb_023323_010 Hb_001678_020--Hb_023323_010 Hb_001678_020--Hb_002233_090 Hb_000384_040 Hb_000384_040 Hb_001678_020--Hb_000384_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.66297 0.73066 0.0931392 0.100787 4.50199 6.72408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.60437 0.369613 1.81537 2.17968 0.106033

CAGE analysis