Hb_000103_370

Information

Type -
Description -
Location Contig103: 315817-323438
Sequence    

Annotation

kegg
ID rcu:RCOM_0910940
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_012069721.1
description PREDICTED: protein argonaute 10 [Jatropha curcas]
swissprot
ID Q9XGW1
description Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1
trembl
ID A0A067KVV2
description Protein argonaute OS=Jatropha curcas GN=JCGZ_02240 PE=3 SV=1
Gene Ontology
ID GO:0003743
description protein argonaute 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01236: 315710-324761 , PASA_asmbl_01237: 322651-322800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_370 0.0 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
2 Hb_007123_010 0.0648423866 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
3 Hb_000002_370 0.0843015415 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
4 Hb_054926_010 0.0855114388 - - glutamate receptor 2 plant, putative [Ricinus communis]
5 Hb_006922_020 0.0863910106 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
6 Hb_008019_010 0.0933392931 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
7 Hb_000809_130 0.0953710804 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
8 Hb_006196_030 0.0958196608 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
9 Hb_002490_060 0.1005004273 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
10 Hb_000836_090 0.1034950534 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
11 Hb_002053_180 0.103550559 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
12 Hb_018563_010 0.1063047699 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
13 Hb_000199_040 0.1067635968 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
14 Hb_004040_010 0.1114995332 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
15 Hb_000996_070 0.1133199071 - - unnamed protein product [Vitis vinifera]
16 Hb_000185_130 0.1147420222 - - UBX domain-containing protein 8-B, putative [Ricinus communis]
17 Hb_007130_020 0.1150736582 - - -
18 Hb_124677_090 0.1151154505 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000905_100 0.1185928323 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
20 Hb_004228_070 0.1186659674 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]

Gene co-expression network

sample Hb_000103_370 Hb_000103_370 Hb_007123_010 Hb_007123_010 Hb_000103_370--Hb_007123_010 Hb_000002_370 Hb_000002_370 Hb_000103_370--Hb_000002_370 Hb_054926_010 Hb_054926_010 Hb_000103_370--Hb_054926_010 Hb_006922_020 Hb_006922_020 Hb_000103_370--Hb_006922_020 Hb_008019_010 Hb_008019_010 Hb_000103_370--Hb_008019_010 Hb_000809_130 Hb_000809_130 Hb_000103_370--Hb_000809_130 Hb_007123_010--Hb_006922_020 Hb_021576_130 Hb_021576_130 Hb_007123_010--Hb_021576_130 Hb_004228_070 Hb_004228_070 Hb_007123_010--Hb_004228_070 Hb_007123_010--Hb_054926_010 Hb_002490_060 Hb_002490_060 Hb_007123_010--Hb_002490_060 Hb_000199_040 Hb_000199_040 Hb_000002_370--Hb_000199_040 Hb_003777_120 Hb_003777_120 Hb_000002_370--Hb_003777_120 Hb_002053_180 Hb_002053_180 Hb_000002_370--Hb_002053_180 Hb_000836_090 Hb_000836_090 Hb_000002_370--Hb_000836_090 Hb_004567_070 Hb_004567_070 Hb_000002_370--Hb_004567_070 Hb_054926_010--Hb_008019_010 Hb_004040_010 Hb_004040_010 Hb_054926_010--Hb_004040_010 Hb_007632_230 Hb_007632_230 Hb_054926_010--Hb_007632_230 Hb_018134_010 Hb_018134_010 Hb_054926_010--Hb_018134_010 Hb_006922_020--Hb_002490_060 Hb_000627_040 Hb_000627_040 Hb_006922_020--Hb_000627_040 Hb_006922_020--Hb_002053_180 Hb_006922_020--Hb_004228_070 Hb_008019_010--Hb_018134_010 Hb_008019_010--Hb_004040_010 Hb_059318_010 Hb_059318_010 Hb_008019_010--Hb_059318_010 Hb_111997_010 Hb_111997_010 Hb_008019_010--Hb_111997_010 Hb_004223_080 Hb_004223_080 Hb_000809_130--Hb_004223_080 Hb_006196_030 Hb_006196_030 Hb_000809_130--Hb_006196_030 Hb_000905_100 Hb_000905_100 Hb_000809_130--Hb_000905_100 Hb_000809_130--Hb_000002_370 Hb_002301_400 Hb_002301_400 Hb_000809_130--Hb_002301_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0375952 8.62975 20.499 15.4153 0.127621 0.0692808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0568297 0 0.0641815 1.13064 8.47122

CAGE analysis