Hb_000103_380

Information

Type -
Description -
Location Contig103: 331348-335713
Sequence    

Annotation

kegg
ID mtr:MTR_3g008420
description 60S ribosomal protein L23
nr
ID XP_010256191.1
description PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A0A0B2QME1
description Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_034170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_380 0.0 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
2 Hb_000832_360 0.0345515779 - - -
3 Hb_001105_140 0.0382736887 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
4 Hb_005736_080 0.0455649456 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
5 Hb_141990_030 0.0493970004 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
6 Hb_002876_010 0.0560031153 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
7 Hb_003058_160 0.0700142668 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004924_040 0.0703417095 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
9 Hb_147069_010 0.0705672316 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
10 Hb_073467_010 0.0713336138 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
11 Hb_000224_250 0.0798961479 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
12 Hb_062503_010 0.0866240979 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_005183_060 0.0965688543 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
14 Hb_001205_050 0.1022504808 - - -
15 Hb_100404_010 0.1172056186 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
16 Hb_101778_010 0.1348518299 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_008225_020 0.1532125024 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
18 Hb_007507_030 0.1624358033 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_001761_160 0.1830281615 - - hypothetical protein VITISV_019364 [Vitis vinifera]
20 Hb_080033_020 0.1950690505 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]

Gene co-expression network

sample Hb_000103_380 Hb_000103_380 Hb_000832_360 Hb_000832_360 Hb_000103_380--Hb_000832_360 Hb_001105_140 Hb_001105_140 Hb_000103_380--Hb_001105_140 Hb_005736_080 Hb_005736_080 Hb_000103_380--Hb_005736_080 Hb_141990_030 Hb_141990_030 Hb_000103_380--Hb_141990_030 Hb_002876_010 Hb_002876_010 Hb_000103_380--Hb_002876_010 Hb_003058_160 Hb_003058_160 Hb_000103_380--Hb_003058_160 Hb_147069_010 Hb_147069_010 Hb_000832_360--Hb_147069_010 Hb_000832_360--Hb_001105_140 Hb_001205_050 Hb_001205_050 Hb_000832_360--Hb_001205_050 Hb_000832_360--Hb_005736_080 Hb_000832_360--Hb_141990_030 Hb_001105_140--Hb_005736_080 Hb_001105_140--Hb_141990_030 Hb_001105_140--Hb_003058_160 Hb_004924_040 Hb_004924_040 Hb_001105_140--Hb_004924_040 Hb_073467_010 Hb_073467_010 Hb_001105_140--Hb_073467_010 Hb_005736_080--Hb_141990_030 Hb_005736_080--Hb_003058_160 Hb_005736_080--Hb_004924_040 Hb_005736_080--Hb_073467_010 Hb_141990_030--Hb_003058_160 Hb_141990_030--Hb_004924_040 Hb_141990_030--Hb_073467_010 Hb_000224_250 Hb_000224_250 Hb_002876_010--Hb_000224_250 Hb_002876_010--Hb_001105_140 Hb_002876_010--Hb_005736_080 Hb_002876_010--Hb_141990_030 Hb_002876_010--Hb_003058_160 Hb_003058_160--Hb_004924_040 Hb_003058_160--Hb_073467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.107982 0.0795408 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.317872

CAGE analysis